feat: implement v0.6.0 mutation engine and db_type runtime selection

Cargo.lock

@@ -245,7 +245,7 @@ dependencies = [
 
 [[package]]
 name = "chronoseal-server"
-version = "0.5.0"
+version = "0.6.0"
 dependencies = [
  "axum",
  "base64",
@@ -273,7 +273,7 @@ dependencies = [
 
 [[package]]
 name = "chronoseal-wasm"
-version = "0.5.0"
+version = "0.6.0"
 dependencies = [
  "base64",
  "blake3",
@@ -1294,7 +1294,7 @@ dependencies = [
 
 [[package]]
 name = "shared"
-version = "0.5.0"
+version = "0.6.0"
 dependencies = [
  "base64",
  "blake3",

README.md

@@ -32,6 +32,9 @@ ChronoSeal establishes a continuous cryptographic proof-of-runtime continuity us
 
 while remaining completely invisible and frictionless to legitimate human users.
 
+v0.6.0 adds a deterministic synthetic gene mutation chain (hybrid `Vec<u8>` gene + bounded environment records) to strengthen anti-replay continuity with server/WASM parity.
+See [docs/REFRACTORING-v0.6.0.md](docs/REFRACTORING-v0.6.0.md) for the full refactoring details.
+
 ---
 
 # Features
@@ -47,8 +50,11 @@ while remaining completely invisible and frictionless to legitimate human users.
 * Ed25519 + Blake3 cryptographic chaining
 * Behavioral entropy validation
 * Randomized stack-machine verification
+* Deterministic synthetic gene mutation chain
+* Server/WASM mutation parity checks
 * Silent rejection model
 * SQLite-backed ephemeral sessions
+* Configurable runtime DB backend selection (`db_type`)
 * Connection-pooled runtime architecture
 * Lightweight deployment footprint
 * Docker and native deployment support
@@ -104,6 +110,7 @@ chronoseal --help
 | `health`     | Perform daemon health probe                |
 | `config`     | Validate and print effective configuration |
 | `generate`   | Generate operational material              |
+| `db-type`    | List database backend support status       |
 | `metrics`    | Output Prometheus metrics                  |
 | `stats`      | Print runtime statistics                   |
 | `completion` | Generate shell completions                 |
@@ -144,18 +151,24 @@ Browser                                    Server
   │  Private key never leaves WASM memory     │
   │                                           │
   ├──── POST /init  { public_key } ──────────►│
-  │◄─── { session_id, salt, opcodes, H0 } ────┤
+  │◄─── { session_id, salt, opcodes_b64, H0,  │
+  │     mutation_step, mutation_order_b64 } ──┤
   │                                           │
   │ Every 12–25s (randomized):                │
   │  ┌─ Collect behavioral entropy            │
-  │  ├─ Execute VM opcode program             │
+  │  ├─ Execute verification VM opcodes       │
+  │  ├─ Preview mutation commitment           │
+  │  ├─ Attach mutation_step + commitment     │
   │  ├─ Advance Blake3 hash chain             │
   │  └─ Sign payload using Ed25519            │
   │                                           │
-  ├──── POST /heartbeat  { signed_payload } ─►│
-  │◄─── { status, next_salt } ────────────────┤
+  ├──── POST /hb  { signed_payload } ────────►│
+  │◄─── { status, next_salt,                  │
+  │     next_mutation_step,                   │
+  │     next_mutation_order_b64 } ────────────┤
   │                                           │
   │ Invalid sessions silently rejected        │
+  │ (`status=ok` without next_* fields)       │
 ```
 
 The server validates:
@@ -163,6 +176,8 @@ The server validates:
 * signature authenticity
 * heartbeat continuity
 * replay resistance
+* mutation step parity
+* mutation commitment parity
 * behavioral entropy
 * timestamp validity
 * fingerprint sanity
@@ -229,10 +244,10 @@ The goal is to make automation:
 
 ```text
 chronoseal-rs/
-├── shared/          Shared types, constants, hash-chain logic
+├── shared/          Shared types, hash chain, gene + mutation engine
 ├── server/          Axum HTTP daemon
 │   ├── routes/      API routes
-│   ├── session.rs   Session lifecycle management
+│   ├── session.rs   Session lifecycle + mutation parity checks
 │   ├── crypto.rs    Ed25519 verification
 │   ├── trust.rs     Behavioral validation
 │   ├── fingerprint/ Browser sanity validation
@@ -242,7 +257,8 @@ chronoseal-rs/
 │   └── metrics.rs   Prometheus metrics
 ├── wasm/            Rust → WASM runtime
 │   ├── crypto.rs    Signing + hash chaining
-│   └── vm.rs        Stack-machine executor
+│   ├── vm.rs        Stack-machine executor
+│   └── vm_extensions.rs Gene mutation preview/commit
 ├── frontend/        Lightweight JS integration
 ├── scripts/         Build/install/dev scripts
 └── docs/            Project documentation
@@ -275,6 +291,21 @@ This makes heartbeat payloads structurally dynamic.
 | `0x08` | NOT      | Unary inversion         |
 | `0x09` | HASH     | Blake3 stack hash       |
 
+## Mutation Opcodes (v0.6.0)
+
+| Opcode | Mnemonic             | Effect |
+| ------ | -------------------- | ------ |
+| `0x23` | GENE_LOAD            | Push `gene[idx]` |
+| `0x24` | GENE_STORE           | Pop and store at `gene[idx]` |
+| `0x25` | MUTATE_POINT         | Apply wrapping byte delta at index |
+| `0x26` | INSERT               | Insert popped byte at index |
+| `0x27` | DELETE               | Delete byte at index and push removed value |
+| `0x28` | TRANSCRIBE           | Push deterministic transcription hash |
+| `0x29` | APPLY_MUTAGEN        | Mix environment symbol quantity into gene byte |
+| `0x2A` | FINALIZE_GENE_HASH   | Push commitment-derived `u32` |
+| `0x2B` | CONSUME              | Pop amount, subtract environment quantity |
+| `0x2C` | PRODUCE              | Pop amount, add environment quantity |
+
 ---
 
 # Hash Chain
@@ -330,14 +361,18 @@ This prevents:
 
 ```sql
 CREATE TABLE IF NOT EXISTS sessions (
-    session_id    TEXT     PRIMARY KEY,
-    public_key    BLOB     NOT NULL,
-    salt          BLOB     NOT NULL,
-    last_hash     BLOB     NOT NULL,
-    chain_length  INTEGER  NOT NULL DEFAULT 1,
-    created_at    INTEGER  NOT NULL,
-    last_seen     INTEGER  NOT NULL,
-    expires_at    INTEGER  NOT NULL
+    session_id            TEXT     PRIMARY KEY,
+    public_key            BLOB     NOT NULL,
+    salt                  BLOB     NOT NULL,
+    last_hash             BLOB     NOT NULL,
+    chain_length          INTEGER  NOT NULL DEFAULT 1,
+    created_at            INTEGER  NOT NULL,
+    last_seen             INTEGER  NOT NULL,
+    expires_at            INTEGER  NOT NULL,
+    gene                  BLOB     NOT NULL DEFAULT X'',
+    environment           BLOB     NOT NULL DEFAULT X'',
+    pending_mutation      BLOB     NOT NULL DEFAULT X'',
+    pending_mutation_step INTEGER  NOT NULL DEFAULT 0
 );
 ```
 
@@ -354,7 +389,8 @@ Session continuity is designed to reset transparently.
 * Rust
 * Axum
 * Tokio
-* SQLite
+* SQLite (`sqlite-in-memory` / `sqlite-in-disk`)
+* `db_type=valkey` compatibility mode (falls back to in-memory in v0.6.0)
 * `r2d2`
 * `thiserror`
 
@@ -464,6 +500,20 @@ $XDG_CONFIG_HOME/chronoseal/config.toml
 ~/.local/state/chronoseal/
 ```
 
+## Database Backend Selection (v0.6.0)
+
+Choose backend with config, env var, or CLI flag:
+
+* Config: `db_type = "sqlite-in-memory" | "sqlite-in-disk" | "valkey"`
+* Env: `CHRONOSEAL_DB_TYPE=...`
+* CLI: `chronoseal run --db-type sqlite-in-disk --db-path /var/lib/chronoseal/chronoseal.sqlite`
+
+Inspect backend status:
+
+```bash
+chronoseal db-type --format text
+```
+
 ---
 
 # Observability

docs/API.md

@@ -39,7 +39,12 @@ Content-Type: application/json
   "salt":          "32-char hex string (16 bytes)",
   "opcodes_b64":   "base64-encoded VM program (8–16 opcodes)",
   "initial_hash":  "64-char hex string (32 bytes Blake3)",
-  "expires_at":    1234567890123
+  "expires_at":    1234567890123,
+  "heartbeat_min_interval_ms": 12000,
+  "heartbeat_max_interval_ms": 25000,
+  "gene_size": 512,
+  "mutation_step": 1,
+  "mutation_order_b64": "base64-encoded mutation program"
 }
 ```
 
@@ -50,6 +55,11 @@ Content-Type: application/json
 | `opcodes_b64` | `string` | Base64 VM program; execute with `run_program()` on every heartbeat |
 | `initial_hash` | `string` | `H(0) = Blake3(session_id ║ pub_key ║ salt)`; the first `prev_hash` |
 | `expires_at` | `number` | Unix timestamp in milliseconds; session expires after 30 minutes of inactivity |
+| `heartbeat_min_interval_ms` | `number` | Lower bound for randomized heartbeat scheduling |
+| `heartbeat_max_interval_ms` | `number` | Upper bound for randomized heartbeat scheduling |
+| `gene_size` | `number` | Initial synthetic gene size used by server and WASM (default 512) |
+| `mutation_step` | `number` | Server-issued mutation order step expected on next heartbeat |
+| `mutation_order_b64` | `string` | Base64-encoded mutation opcode program for the current step |
 
 #### Error
 
@@ -89,6 +99,8 @@ Content-Type: application/json
     "devicePixelRatio":   "2",
     "hardwareConcurrency": 8
   },
+  "mutation_step": 1,
+  "gene_commitment": "64-char hex Blake3 commitment",
   "signature": "128-char hex Ed25519 signature"
 }
 ```
@@ -104,6 +116,8 @@ Content-Type: application/json
 | `fingerprint.aspectRatio` | `string` | `(screen.width / screen.height).toFixed(10)` |
 | `fingerprint.devicePixelRatio` | `string` | `String(window.devicePixelRatio)` |
 | `fingerprint.hardwareConcurrency` | `number` | `navigator.hardwareConcurrency \|\| 1` |
+| `mutation_step` | `number` | Must match server-side pending mutation step |
+| `gene_commitment` | `string` | Commitment of the locally previewed candidate gene after applying `mutation_order_b64` |
 | `signature` | `string` | Hex-encoded 64-byte Ed25519 signature over the canonical payload |
 
 #### Canonical Signing Payload
@@ -115,6 +129,8 @@ alphabetically. Nested object keys follow their natural serialisation order.
 {
   "entropyData":  { "events": [{ "t": …, "x": …, "y": … }] },
   "fingerprint":  { "aspectRatio": "…", "devicePixelRatio": "…", "hardwareConcurrency": … },
+  "geneCommitment":"…",
+  "mutationStep": …,
   "prevHash":     "…",
   "sessionId":    "…",
   "stackState":   { "ip": …, "stack": […] },
@@ -123,22 +139,28 @@ alphabetically. Nested object keys follow their natural serialisation order.
 ```
 
 Note: field names in the signing payload use camelCase (`sessionId`,
-`prevHash`, `entropyData`, `stackState`) while the request body uses
-snake_case (`session_id`, `prev_hash`, `entropy_data`, `stack_state`).
+`prevHash`, `entropyData`, `stackState`, `mutationStep`, `geneCommitment`)
+while the request body uses snake_case (`session_id`, `prev_hash`,
+`entropy_data`, `stack_state`, `mutation_step`, `gene_commitment`).
 
 #### Response `200 OK` — Accepted
 
 ```json
 {
   "status":    "ok",
-  "next_salt": "32-char hex string (16 bytes)"
+  "next_salt": "32-char hex string (16 bytes)",
+  "next_mutation_step": 2,
+  "next_mutation_order_b64": "base64-encoded mutation program"
 }
 ```
 
 The client must:
-1. Capture `sentSalt = currentSalt` before updating.
-2. Set `currentSalt = next_salt`.
-3. Compute `prevHash = compute_next_hash(prevHash, timestamp, entropyJson, stackStateJson, sentSalt)`.
+1. Preview commitment locally from `mutation_order_b64` and send it in the heartbeat.
+2. Capture `sentSalt = currentSalt` before updating.
+3. Set `currentSalt = next_salt`.
+4. Compute `prevHash = compute_next_hash(prevHash, timestamp, entropyJson, stackStateJson, sentSalt)`.
+5. Commit the previewed gene state.
+6. Replace pending mutation values with `next_mutation_step` and `next_mutation_order_b64`.
 
 #### Response `200 OK` — Rejected
 
@@ -148,7 +170,8 @@ The client must:
 }
 ```
 
-`next_salt` is absent. The response body is intentionally identical in
+`next_salt`, `next_mutation_step`, and `next_mutation_order_b64` are absent.
+The response body is intentionally identical in
 structure. Rejections are silent — the caller cannot distinguish a validation
 failure from a rate limit hit or an expired session.
 
@@ -168,6 +191,8 @@ Heartbeats are rejected (silently) if any of the following checks fail:
 | Session expired | `current_time_ms > expires_at` |
 | Signature invalid | Ed25519 verification fails against stored public key |
 | Hash chain broken | `hex(prev_hash) ≠ stored last_hash` |
+| Mutation step mismatch | `mutation_step ≠ pending_mutation_step` |
+| Mutation commitment mismatch | `gene_commitment` does not match server-computed candidate commitment |
 | Timestamp drift | `\|server_now_ms - timestamp\| > 30 000` |
 | Insufficient mouse events | `events.len() < 3` |
 | Insufficient mouse distance | `total_dist < 10.0 px` |
@@ -202,7 +227,7 @@ Rust types (serde derive, no custom ordering).
 
 ## WASM API
 
-The WASM module (`antibot_wasm`) exports the following functions to JavaScript:
+The WASM module (`chronoseal_wasm`) exports the following functions to JavaScript:
 
 | Function | Signature | Description |
 |---|---|---|
@@ -211,6 +236,11 @@ The WASM module (`antibot_wasm`) exports the following functions to JavaScript:
 | `sign_message(msg)` | `(string) → string` | Sign UTF-8 string; return hex signature, or `""` if not initialised. |
 | `compute_next_hash(prev, ts, entropy, stack, salt)` | `(string, u64, string, string, string) → string` | Compute next Blake3 chain hash; all inputs/output hex or JSON strings. |
 | `run_program(b64)` | `(string) → JsValue` | Execute base64 VM program; return `{ stack: u32[], ip: number }`. |
+| `init_gene_state(gene_size)` | `(u32) → bool` | Initialise synthetic gene state in WASM memory. |
+| `preview_gene_commitment(order_b64)` | `(string) → string` | Apply mutation order on preview state and return commitment hex. |
+| `commit_gene_preview()` | `() → bool` | Commit previewed mutation state after accepted heartbeat. |
+| `discard_gene_preview()` | `() → void` | Discard previewed mutation state after rejection/error. |
+| `current_gene_commitment()` | `() → string` | Return current committed gene commitment hex. |
 
-All functions return empty strings on error rather than panicking.
-Callers must check for empty return values before using the result.
+String-returning functions return `""` on error rather than panicking. Callers
+must check for empty strings and boolean return values before use.

docs/ARCHITECTURE.md

@@ -1,5 +1,7 @@
 # ChronoSeal — Architecture
 
+> Note (v0.6.0): Synthetic Gene Mutation flow and mutation handshake updates are documented in [REFRACTORING-v0.6.0.md](REFRACTORING-v0.6.0.md) and [API.md](API.md).
+
 ## Overview
 
 ChronoSeal is a stateless, cryptographic browser attestation framework. Its
@@ -42,7 +44,7 @@ synchronisation burden alone makes scaled operation expensive.
 ### High-Level Design
 
 - **Core**: Rust + Axum (async web framework)
-- **Storage**: In-memory SQLite (fast, ephemeral per process — restarts are clean)
+- **Storage**: `db_type` selectable (`sqlite-in-memory`, `sqlite-in-disk`, `valkey` compatibility mode)
 - **Client**: WASM + Rust (runs in browser for proof generation)
 - **Security Model**: Behavioral analysis + hash chaining + entropy scoring
 - **Deployment**: Static musl binary, systemd service, optional Docker

docs/REFRACTORING-v0.6.0.md

@@ -0,0 +1,115 @@
+# ChronoSeal v0.6.0 — Synthetic Gene Mutation System
+
+## Overview & Motivation
+ChronoSeal v0.6.0 introduces a synthetic mutation chain model to strengthen attestation liveness and anti-replay guarantees while preserving privacy-first behavior. The core model combines:
+- a primary byte-oriented gene buffer (`Vec<u8>`), and
+- a bounded secondary environment map (`Vec<(u16 symbol, u32 quantity)>`).
+
+Each heartbeat now carries deterministic mutation progression evidence (`mutation_step`, `gene_commitment`) that is validated server-side against the exact server-issued mutation order. This design increases attacker workload by coupling cryptographic chain continuity with stateful deterministic mutation parity.
+
+## Architectural Goals
+1. Keep runtime behavior deterministic across server and WASM execution.
+2. Preserve ephemerality and low operational complexity.
+3. Minimize additional latency on the heartbeat path.
+4. Improve protocol resistance against replay and mutation tampering.
+5. Maintain a maintainable codebase with explicit invariants and focused modules.
+
+## Design Decisions
+1. **Shared mutation engine**  
+   Mutation opcode semantics live in `shared/src/vm_extensions.rs` to guarantee server/client parity from one implementation.
+
+2. **Deterministic gene commitment**  
+   A domain-separated BLAKE3 commitment (`chronoseal/gene/v1`) binds both gene bytes and sorted environment records.
+
+3. **Bounded mutation complexity**  
+   Mutation program length is capped (`MAX_MUTATION_PROGRAM_BYTES`) and environment cardinality is capped (`MAX_ENV_RECORDS`).
+
+4. **Strict validation on ingest**  
+   Environment payloads are validated for sortedness, uniqueness, non-zero quantity, and length constraints.
+
+5. **Protocol-level mutation handshake**  
+   `InitResponse` and `Heartbeat` payloads now include mutation step/order and commitment fields.
+
+6. **DB backend control via `db_type`**  
+   Server CLI/config now supports:
+   - `sqlite-in-memory` (default)
+   - `sqlite-in-disk` (active; uses `db_path`)
+   - `valkey` (active compatibility mode; currently falls back to in-memory)
+
+## Implementation Plan
+1. Add gene model + deterministic commitment in `shared/gene.rs`.
+2. Implement v0.6.0 mutation opcode set in shared VM extensions.
+3. Persist mutation state per session (`gene`, `environment`, `pending_mutation`, `pending_mutation_step`).
+4. Extend protocol schema for mutation fields in init/heartbeat exchange.
+5. Validate mutation step + commitment parity before accepting heartbeat updates.
+6. Add WASM preview/commit mutation lifecycle mirroring server behavior.
+7. Add `db_type` CLI/config flow and runtime backend initialization strategy.
+8. Add migration-safe schema extension (column existence checks + index creation).
+
+## Testing Strategy (detailed section)
+ChronoSeal v0.6.0 test coverage is organized across unit, integration, and randomized/fuzz-style validation.
+
+1. **Unit, integration, and property tests**
+   - Unit tests for gene invariants and encoding/decoding.
+   - Unit tests for every mutation opcode with stack-effect assertions.
+   - Integration tests for full session lifecycle and heartbeat acceptance/rejection paths.
+   - Table-driven randomized tests and fuzz-style random bytecode tests to validate deterministic failure/success symmetry.
+
+2. **Server-client parity testing**
+   - Shared opcode engine parity tests across seeded mutation sequences.
+   - Multi-step mutation chain test (`test_mutation_chain`) asserting identical server/client final state.
+   - 10+ heartbeat deterministic simulation tests in session integration suite.
+
+3. **Evasion / attack simulation testing**
+   - Replay attack simulation.
+   - Mutation step mismatch rejection.
+   - Mutation commitment tampering rejection.
+   - Malformed server mutation payload rejection.
+   - Stack underflow / unknown opcode / truncated program rejection.
+
+4. **Performance regression testing**
+   - Bounded execution checks through capped program size and bounded record counts.
+   - Timing smoke regression test for mutation execution loops.
+   - End-to-end heartbeat test coverage to detect behavior regressions on hot paths.
+
+## Security Analysis
+1. **Replay resistance**  
+   Heartbeats are now tied to both chain hash and mutation step progression.
+
+2. **Mutation tampering resistance**  
+   Server recomputes candidate gene state from authoritative pending mutation program and rejects commitment mismatch.
+
+3. **Protocol ambiguity reduction**  
+   Canonical signing payload includes mutation fields, reducing exploitable unsigned state.
+
+4. **Input hardening**  
+   Program size limits, stack underflow checks, and strict environment decoding reduce parser abuse and malformed payload amplification.
+
+5. **Deterministic failure semantics**  
+   Invalid mutation instructions fail predictably and symmetrically across server and WASM paths.
+
+## Performance Considerations
+1. Mutation instructions are lightweight and mostly O(1); only `INSERT`/`DELETE` are O(n) but bounded by max gene size.
+2. Environment operations use sorted-vector binary search with tight upper bound (`MAX_ENV_RECORDS`).
+3. Commitment hashing is linear in gene size and record count, both bounded.
+4. Shared engine avoids duplicate logic and divergence-induced debugging overhead.
+
+## Migration & Backward Compatibility
+1. Schema migration is additive; new columns are created when missing.
+2. Existing deployments without mutation fields require updated client+server pair for heartbeat compatibility.
+3. `db_type` defaults to in-memory to preserve ephemeral behavior.
+4. `sqlite-in-disk` is now directly usable via `db_path`.
+5. `valkey` currently runs in compatibility mode (in-memory fallback) to avoid startup failure while preserving CLI contract.
+
+## Risks & Mitigations
+1. **Risk: State divergence between server and client**  
+   Mitigation: shared opcode engine + deterministic seeded parity tests + multi-heartbeat integration tests.
+
+2. **Risk: Mutation opcode abuse via malformed programs**  
+   Mitigation: strict parsing, length caps, explicit underflow/unknown-opcode errors.
+
+3. **Risk: Performance regressions**  
+   Mitigation: bounded structures, smoke timing tests, and focused hot-path validation.
+
+4. **Risk: Backend confusion during `db_type` rollout**  
+   Mitigation: explicit CLI command (`chronoseal db-type`), config output visibility, and clear runtime compatibility behavior.

docs/chronoseal.example.toml

@@ -1,5 +1,9 @@
 bind = "0.0.0.0:3000"
+# sqlite-in-memory (default), sqlite-in-disk, valkey (v0.6.0 compatibility mode)
+db_type = "sqlite-in-memory"
 pid_file = "/run/chronoseal.pid"
 db_path = "/var/lib/chronoseal/chronoseal.sqlite"
 frontend_dir = "/usr/share/chronoseal/frontend"
 log_file = "/var/log/chronoseal/chronoseal.jsonl"
+# synthetic gene size (1..=65536), default 512
+gene_size = 512

frontend/heartbeat.js

@@ -1,10 +1,21 @@
-import init, { generate_keypair, sign_message, compute_next_hash, run_program } from './pkg/chronoseal_wasm.js';
+import init, {
+    generate_keypair,
+    sign_message,
+    compute_next_hash,
+    run_program,
+    init_gene_state,
+    preview_gene_commitment,
+    commit_gene_preview,
+    discard_gene_preview
+} from './pkg/chronoseal_wasm.js';
 import { collectEntropy } from './entropy.js';
 import { sendRequest } from './transport.js';
 
 let session, prevHash, currentSalt, opcodesB64, lastTime;
 let minInterval = 12000;
 let maxInterval = 25000;
+let pendingMutationStep = 0;
+let pendingMutationOrderB64 = '';
 
 export async function initHeartbeat() {
     await init();
@@ -16,6 +27,11 @@ export async function initHeartbeat() {
     opcodesB64 = initResp.opcodes_b64;
     minInterval = initResp.heartbeat_min_interval_ms || 12000;
     maxInterval = initResp.heartbeat_max_interval_ms || 25000;
+    if (!init_gene_state(initResp.gene_size || 512)) {
+        throw new Error('Failed to initialize gene state');
+    }
+    pendingMutationStep = initResp.mutation_step;
+    pendingMutationOrderB64 = initResp.mutation_order_b64;
     lastTime = performance.now();
     scheduleNext();
 }
@@ -40,6 +56,10 @@ async function sendHeartbeat() {
         const timestamp = Date.now();
         const entropyData = { events: events.map(e => ({ x: e.x, y: e.y, t: e.t })) };
         const entropyJson = JSON.stringify(entropyData);
+        const geneCommitment = preview_gene_commitment(pendingMutationOrderB64);
+        if (!geneCommitment) {
+            throw new Error('Unable to compute mutation commitment');
+        }
 
         const signable = {
             sessionId: session,
@@ -47,11 +67,14 @@ async function sendHeartbeat() {
             timestamp: timestamp,
             entropyData: entropyData,
             stackState: JSON.parse(stackState),
-            fingerprint: fingerprint
+            fingerprint: fingerprint,
+            mutationStep: pendingMutationStep,
+            geneCommitment: geneCommitment
         };
         const msg = JSON.stringify(signable, Object.keys(signable).sort());
         const sig = sign_message(msg);
         if (!sig) {
+            discard_gene_preview();
             console.error('Keypair not initialised — skipping heartbeat');
             return;
         }
@@ -62,22 +85,32 @@ async function sendHeartbeat() {
             entropy_data: entropyData,
             stack_state: JSON.parse(stackState),
             fingerprint,
+            mutation_step: pendingMutationStep,
+            gene_commitment: geneCommitment,
             signature: sig
         });
 
-        if (resp.next_salt) {
+        if (resp.next_salt && resp.next_mutation_step && resp.next_mutation_order_b64) {
+            if (!commit_gene_preview()) {
+                discard_gene_preview();
+                throw new Error('Failed to commit local mutation preview');
+            }
             // IMPORTANT: capture the salt that was active when this heartbeat was sent.
             // The server computes new_hash = H(prev, ts, entropy, stack, OLD_salt) and stores it,
             // then rotates to next_salt.  We must mirror that using the same old salt, then rotate.
             const sentSalt = currentSalt;
             currentSalt = resp.next_salt;
             prevHash = compute_next_hash(prevHash, timestamp, entropyJson, stackState, sentSalt);
+            pendingMutationStep = resp.next_mutation_step;
+            pendingMutationOrderB64 = resp.next_mutation_order_b64;
         } else {
+            discard_gene_preview();
             console.warn('Heartbeat rejected');
         }
     } catch (e) {
+        discard_gene_preview();
         console.error(e);
     } finally {
         scheduleNext();
     }
-}
+}

server/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "chronoseal-server"
-version = "0.5.0"
+version = "0.6.0"
 edition = "2021"
 
 [[bin]]

server/src/cli.rs

@@ -53,7 +53,7 @@ impl GlobalArgs {
 pub enum Command {
     /// Run the ChronoSeal daemon.
     #[command(
-        after_help = "Examples:\n  chronoseal run\n  chronoseal run --bind 127.0.0.1:3000 --frontend-dir /srv/chronoseal/frontend\n  CHRONOSEAL_BIND=0.0.0.0:3000 chronoseal run"
+        after_help = "Examples:\n  chronoseal run\n  chronoseal run --db-type sqlite-in-memory\n  chronoseal run --bind 127.0.0.1:3000 --frontend-dir /srv/chronoseal/frontend\n  CHRONOSEAL_BIND=0.0.0.0:3000 chronoseal run"
     )]
     Run(RunArgs),
 
@@ -81,6 +81,10 @@ pub enum Command {
     #[command(after_help = "Examples:\n  chronoseal version\n  chronoseal version --format json")]
     Version,
 
+    /// List database backend types and implementation status.
+    #[command(after_help = "Examples:\n  chronoseal db-type\n  chronoseal db-type --format json")]
+    DbType,
+
     /// Print Prometheus metrics from the running daemon.
     #[command(
         after_help = "Examples:\n  chronoseal metrics\n  chronoseal metrics --bind 127.0.0.1:3000"
@@ -103,6 +107,11 @@ pub struct RunArgs {
     #[command(flatten)]
     pub runtime: RuntimeArgs,
 
+    /// Database backend selection.
+    /// sqlite-in-memory is active. sqlite-in-disk and valkey are planned (TODO).
+    #[arg(long, env = "CHRONOSEAL_DB_TYPE", value_enum)]
+    pub db_type: Option<crate::config::DbType>,
+
     /// SQLite database path. Use ':memory:' for ephemeral state.
     #[arg(long, env = "CHRONOSEAL_DB_PATH")]
     pub db_path: Option<PathBuf>,

server/src/config.rs

@@ -1,4 +1,5 @@
 use crate::cli::{RunArgs, RuntimeArgs};
+use clap::ValueEnum;
 use serde::{Deserialize, Serialize};
 use std::{
     env, fs, io,
@@ -6,10 +7,30 @@ use std::{
     path::{Path, PathBuf},
 };
 
+#[derive(Debug, Clone, Copy, PartialEq, Eq, Serialize, Deserialize, ValueEnum)]
+#[serde(rename_all = "kebab-case")]
+#[value(rename_all = "kebab-case")]
+pub enum DbType {
+    SqliteInMemory,
+    SqliteInDisk,
+    Valkey,
+}
+
+impl DbType {
+    pub fn as_str(self) -> &'static str {
+        match self {
+            Self::SqliteInMemory => "sqlite-in-memory",
+            Self::SqliteInDisk => "sqlite-in-disk",
+            Self::Valkey => "valkey",
+        }
+    }
+}
+
 #[derive(Debug, Clone, Serialize, Deserialize)]
 #[serde(default, deny_unknown_fields)]
 pub struct Config {
     pub bind: String,
+    pub db_type: DbType,
     pub pid_file: PathBuf,
     pub db_path: PathBuf,
     pub frontend_dir: PathBuf,
@@ -24,12 +45,14 @@ pub struct Config {
     pub max_mouse_avg_speed: f64,
     pub min_pause_count: u32,
     pub require_mouse_activity: bool,
+    pub gene_size: usize,
 }
 
 impl Default for Config {
     fn default() -> Self {
         Self {
             bind: "0.0.0.0:3000".to_string(),
+            db_type: DbType::SqliteInMemory,
             pid_file: PathBuf::from("/run/chronoseal.pid"),
             db_path: default_state_dir().join("chronoseal.sqlite"),
             frontend_dir: PathBuf::from("/usr/share/chronoseal/frontend"),
@@ -44,6 +67,7 @@ impl Default for Config {
             max_mouse_avg_speed: 2.0,
             min_pause_count: 1,
             require_mouse_activity: true,
+            gene_size: shared::constants::DEFAULT_GENE_SIZE,
         }
     }
 }
@@ -82,6 +106,9 @@ impl Config {
 
     pub fn apply_run_args(&mut self, args: &RunArgs) {
         self.apply_runtime_args(&args.runtime);
+        if let Some(db_type) = args.db_type {
+            self.db_type = db_type;
+        }
         if let Some(db_path) = &args.db_path {
             self.db_path = db_path.clone();
         }
@@ -100,6 +127,11 @@ impl Config {
                 bind: self.bind.clone(),
                 source,
             })?;
+        if !(1..=shared::constants::MAX_GENE_SIZE).contains(&self.gene_size) {
+            return Err(ConfigError::InvalidGeneSize {
+                size: self.gene_size,
+            });
+        }
         Ok(())
     }
 
@@ -107,6 +139,14 @@ impl Config {
         if let Ok(value) = env::var("CHRONOSEAL_BIND") {
             self.bind = value;
         }
+        if let Ok(value) = env::var("CHRONOSEAL_DB_TYPE") {
+            self.db_type = match value.as_str() {
+                "sqlite-in-memory" => DbType::SqliteInMemory,
+                "sqlite-in-disk" => DbType::SqliteInDisk,
+                "valkey" => DbType::Valkey,
+                _ => self.db_type,
+            };
+        }
         if let Ok(value) = env::var("CHRONOSEAL_PID_FILE") {
             self.pid_file = PathBuf::from(value);
         }
@@ -169,6 +209,11 @@ impl Config {
                 self.require_mouse_activity = val;
             }
         }
+        if let Ok(value) = env::var("CHRONOSEAL_GENE_SIZE") {
+            if let Ok(val) = value.parse() {
+                self.gene_size = val;
+            }
+        }
     }
 }
 
@@ -186,6 +231,9 @@ pub enum ConfigError {
         bind: String,
         source: std::net::AddrParseError,
     },
+    InvalidGeneSize {
+        size: usize,
+    },
 }
 
 impl std::fmt::Display for ConfigError {
@@ -198,6 +246,13 @@ impl std::fmt::Display for ConfigError {
             Self::InvalidBind { bind, source } => {
                 write!(f, "invalid bind address {bind}: {source}")
             }
+            Self::InvalidGeneSize { size } => {
+                write!(
+                    f,
+                    "invalid gene size {size}; expected 1..={}",
+                    shared::constants::MAX_GENE_SIZE
+                )
+            }
         }
     }
 }
@@ -238,3 +293,55 @@ fn default_state_dir() -> PathBuf {
     }
     PathBuf::from("/var/lib/chronoseal")
 }
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    #[test]
+    fn test_default_db_type_is_sqlite_in_memory() {
+        let cfg = Config::default();
+        assert_eq!(cfg.db_type, DbType::SqliteInMemory);
+    }
+
+    #[test]
+    fn test_apply_run_args_overrides_db_type() {
+        let mut cfg = Config::default();
+        let args = crate::cli::RunArgs {
+            runtime: crate::cli::RuntimeArgs {
+                bind: None,
+                pid_file: None,
+            },
+            db_type: Some(DbType::SqliteInDisk),
+            db_path: None,
+            frontend_dir: None,
+            log_file: None,
+        };
+        cfg.apply_run_args(&args);
+        assert_eq!(cfg.db_type, DbType::SqliteInDisk);
+    }
+
+    #[test]
+    fn test_toml_parses_db_type_kebab_case() {
+        let raw = r#"
+bind = "127.0.0.1:3000"
+db_type = "valkey"
+pid_file = "/tmp/pid"
+db_path = "/tmp/db.sqlite"
+frontend_dir = "."
+heartbeat_min_interval_ms = 12000
+heartbeat_max_interval_ms = 25000
+expiration_minutes = 30
+rate_limit_count = 5
+rate_limit_window_secs = 10
+max_timestamp_drift_ms = 30000
+min_mouse_total_dist = 1.0
+max_mouse_avg_speed = 2.0
+min_pause_count = 1
+require_mouse_activity = true
+gene_size = 512
+"#;
+        let cfg: Config = toml::from_str(raw).unwrap();
+        assert_eq!(cfg.db_type, DbType::Valkey);
+    }
+}

server/src/crypto.rs

@@ -2,6 +2,23 @@ use ed25519_dalek::{Signature, VerifyingKey};
 use shared::protocol::HeartbeatRequest;
 use std::collections::BTreeMap;
 
+pub fn canonical_signing_message(
+    req: &HeartbeatRequest,
+) -> Result<String, Box<dyn std::error::Error>> {
+    // Build canonical JSON with BTreeMap so keys are sorted alphabetically,
+    // matching the JS client's JSON.stringify(obj, Object.keys(obj).sort()).
+    let mut payload: BTreeMap<&str, serde_json::Value> = BTreeMap::new();
+    payload.insert("entropyData", serde_json::to_value(&req.entropy_data)?);
+    payload.insert("fingerprint", serde_json::to_value(&req.fingerprint)?);
+    payload.insert("geneCommitment", serde_json::json!(req.gene_commitment));
+    payload.insert("mutationStep", serde_json::json!(req.mutation_step));
+    payload.insert("prevHash", serde_json::json!(req.prev_hash));
+    payload.insert("sessionId", serde_json::json!(req.session_id));
+    payload.insert("stackState", serde_json::to_value(&req.stack_state)?);
+    payload.insert("timestamp", serde_json::json!(req.timestamp));
+    Ok(serde_json::to_string(&payload)?)
+}
+
 pub fn verify_signature(
     pub_key_bytes: &[u8],
     req: &HeartbeatRequest,
@@ -9,18 +26,7 @@ pub fn verify_signature(
     let pk = VerifyingKey::from_bytes(&pub_key_bytes.try_into().map_err(|_| "invalid pubkey")?)?;
     let sig_bytes = hex::decode(&req.signature)?;
     let sig = Signature::from_slice(&sig_bytes)?;
-
-    // Build canonical JSON with BTreeMap so keys are sorted alphabetically,
-    // matching the JS client's JSON.stringify(obj, Object.keys(obj).sort()).
-    // Sorted order: entropyData, fingerprint, prevHash, sessionId, stackState, timestamp
-    let mut payload: BTreeMap<&str, serde_json::Value> = BTreeMap::new();
-    payload.insert("entropyData", serde_json::to_value(&req.entropy_data)?);
-    payload.insert("fingerprint", serde_json::to_value(&req.fingerprint)?);
-    payload.insert("prevHash", serde_json::json!(req.prev_hash));
-    payload.insert("sessionId", serde_json::json!(req.session_id));
-    payload.insert("stackState", serde_json::to_value(&req.stack_state)?);
-    payload.insert("timestamp", serde_json::json!(req.timestamp));
-    let message = serde_json::to_string(&payload)?;
+    let message = canonical_signing_message(req)?;
 
     pk.verify_strict(message.as_bytes(), &sig)?;
     Ok(())

server/src/errors.rs

@@ -19,6 +19,9 @@ pub enum SessionError {
 
     #[error("Invalid public key length")]
     InvalidPublicKeyLength,
+
+    #[error("Invalid gene configuration: {0}")]
+    InvalidGeneConfiguration(String),
 }
 
 impl IntoResponse for SessionError {
@@ -65,4 +68,16 @@ pub enum VerificationError {
 
     #[error("Fingerprint validation failed: {0}")]
     FingerprintFailed(String),
+
+    #[error("Mutation step mismatch: expected {expected}, got {got}")]
+    MutationStepMismatch { expected: u64, got: u64 },
+
+    #[error("Mutation commitment mismatch")]
+    MutationCommitmentMismatch,
+
+    #[error("Mutation program error: {0}")]
+    MutationProgram(String),
+
+    #[error("Gene state error: {0}")]
+    GeneState(String),
 }

server/src/main.rs

@@ -75,6 +75,9 @@ async fn try_main() -> Result<(), Box<dyn std::error::Error>> {
         Some(Command::Version) => {
             output::print(cli.globals.output_format(), &runtime::version())?;
         }
+        Some(Command::DbType) => {
+            output::print(cli.globals.output_format(), &runtime::db_type_report())?;
+        }
         Some(Command::Metrics(args)) => {
             let mut config = Config::load(cli.globals.config.as_deref())?;
             config.apply_runtime_args(args);

server/src/routes/heartbeat.rs

@@ -21,6 +21,8 @@ pub async fn handler(
                 Json(HeartbeatResponse {
                     status: "ok".into(),
                     next_salt: None,
+                    next_mutation_step: None,
+                    next_mutation_order_b64: None,
                 }),
             );
         }
@@ -36,16 +38,20 @@ pub async fn handler(
                 Json(HeartbeatResponse {
                     status: "error".into(),
                     next_salt: None,
+                    next_mutation_step: None,
+                    next_mutation_order_b64: None,
                 }),
             );
         }
     };
     match crate::session::verify_heartbeat(&conn, &config, &payload) {
-        Ok(next_salt) => (
+        Ok(result) => (
             StatusCode::OK,
             Json(HeartbeatResponse {
                 status: "ok".into(),
-                next_salt: Some(next_salt),
+                next_salt: Some(result.next_salt_hex),
+                next_mutation_step: Some(result.next_mutation_step),
+                next_mutation_order_b64: Some(result.next_mutation_order_b64),
             }),
         ),
         Err(e) => {
@@ -55,8 +61,157 @@ pub async fn handler(
                 Json(HeartbeatResponse {
                     status: "ok".into(),
                     next_salt: None,
+                    next_mutation_step: None,
+                    next_mutation_order_b64: None,
                 }),
             )
         }
     }
 }
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use axum::{extract::State, Json};
+    use ed25519_dalek::{Signer, SigningKey};
+    use shared::protocol::{EntropyData, Fingerprint, InitResponse, MouseEvent, StackState};
+    use std::path::Path;
+
+    fn test_config() -> crate::config::Config {
+        crate::config::Config {
+            expiration_minutes: 30,
+            max_timestamp_drift_ms: 30_000,
+            min_mouse_total_dist: 1.0,
+            max_mouse_avg_speed: 4.0,
+            min_pause_count: 0,
+            require_mouse_activity: false,
+            gene_size: 64,
+            rate_limit_count: 20,
+            rate_limit_window_secs: 10,
+            ..crate::config::Config::default()
+        }
+    }
+
+    fn sign_request(sk: &SigningKey, req: &mut HeartbeatRequest) {
+        let msg = crate::crypto::canonical_signing_message(req).unwrap();
+        req.signature = hex::encode(sk.sign(msg.as_bytes()).to_bytes());
+    }
+
+    fn build_request(
+        init: &InitResponse,
+        sk: &SigningKey,
+        mutation_step: u64,
+        mutation_order_b64: &str,
+    ) -> HeartbeatRequest {
+        let entropy_data = EntropyData {
+            events: vec![
+                MouseEvent {
+                    x: 1.0,
+                    y: 1.0,
+                    timestamp_ms: 1.0,
+                },
+                MouseEvent {
+                    x: 3.0,
+                    y: 1.0,
+                    timestamp_ms: 2.0,
+                },
+                MouseEvent {
+                    x: 3.0,
+                    y: 1.0,
+                    timestamp_ms: 120.0,
+                },
+            ],
+        };
+        let stack_state = StackState {
+            stack: vec![9, 10, 11],
+            ip: 2,
+        };
+
+        let order =
+            shared::vm_extensions::decode_order_b64(mutation_step, mutation_order_b64).unwrap();
+        let committed = shared::gene::new_state(init.gene_size as usize).unwrap();
+        let candidate =
+            shared::vm_extensions::apply_program_clone(&committed, &order.program).unwrap();
+
+        let mut req = HeartbeatRequest {
+            session_id: init.session_id.clone(),
+            prev_hash: init.initial_hash.clone(),
+            timestamp: crate::storage::current_time_ms(),
+            entropy_data,
+            stack_state,
+            fingerprint: Fingerprint {
+                aspect_ratio: "1.77".to_string(),
+                device_pixel_ratio: "2.0".to_string(),
+                hardware_concurrency: 8,
+            },
+            mutation_step,
+            gene_commitment: shared::gene::commitment_hex(&candidate),
+            signature: String::new(),
+        };
+        sign_request(sk, &mut req);
+        req
+    }
+
+    async fn setup_state_and_session(
+        config: crate::config::Config,
+    ) -> (Arc<AppState>, InitResponse, SigningKey) {
+        let pool = crate::storage::init_pool(Path::new(":memory:")).unwrap();
+        let state = Arc::new(AppState {
+            db_pool: pool,
+            rate_limiter: tokio::sync::Mutex::new(crate::ratelimit::RateLimiter::new()),
+            config: std::sync::RwLock::new(config.clone()),
+        });
+
+        let mut rng = rand::thread_rng();
+        let sk = SigningKey::generate(&mut rng);
+        let pk_hex = hex::encode(sk.verifying_key().to_bytes());
+        let conn = state.db_pool.get().unwrap();
+        let init = crate::session::create_session(&conn, &config, &pk_hex).unwrap();
+        (state, init, sk)
+    }
+
+    #[tokio::test]
+    async fn test_handler_success_returns_next_mutation_fields() {
+        let config = test_config();
+        let (state, init, sk) = setup_state_and_session(config).await;
+        let req = build_request(&init, &sk, init.mutation_step, &init.mutation_order_b64);
+
+        let (status, Json(body)) = handler(State(state), Json(req)).await;
+        assert_eq!(status, StatusCode::OK);
+        assert_eq!(body.status, "ok");
+        assert!(body.next_salt.is_some());
+        assert!(body.next_mutation_step.is_some());
+        assert!(body.next_mutation_order_b64.is_some());
+    }
+
+    #[tokio::test]
+    async fn test_handler_tampered_commitment_is_silent_failure() {
+        let config = test_config();
+        let (state, init, sk) = setup_state_and_session(config).await;
+        let mut req = build_request(&init, &sk, init.mutation_step, &init.mutation_order_b64);
+        req.gene_commitment = "00".repeat(32);
+        sign_request(&sk, &mut req);
+
+        let (status, Json(body)) = handler(State(state), Json(req)).await;
+        assert_eq!(status, StatusCode::OK);
+        assert_eq!(body.status, "ok");
+        assert!(body.next_salt.is_none());
+        assert!(body.next_mutation_step.is_none());
+        assert!(body.next_mutation_order_b64.is_none());
+    }
+
+    #[tokio::test]
+    async fn test_handler_rate_limit_returns_no_mutation_data() {
+        let mut config = test_config();
+        config.rate_limit_count = 0;
+        let (state, init, sk) = setup_state_and_session(config).await;
+        let req = build_request(&init, &sk, init.mutation_step, &init.mutation_order_b64);
+
+        let (status, Json(body)) = handler(State(state), Json(req)).await;
+        assert_eq!(status, StatusCode::OK);
+        assert_eq!(body.status, "ok");
+        assert!(body.next_salt.is_none());
+        assert!(body.next_mutation_step.is_none());
+        assert!(body.next_mutation_order_b64.is_none());
+    }
+}

server/src/runtime.rs

@@ -80,18 +80,51 @@ impl TextOutput for KeypairReport {
     }
 }
 
+#[derive(Debug, Serialize)]
+pub struct DbTypeEntry {
+    pub name: &'static str,
+    pub implemented: bool,
+    pub notes: &'static str,
+}
+
+#[derive(Debug, Serialize)]
+pub struct DbTypeReport {
+    pub default: &'static str,
+    pub backends: Vec<DbTypeEntry>,
+}
+
+impl TextOutput for DbTypeReport {
+    fn to_text(&self) -> String {
+        let mut out = format!("default={}\n", self.default);
+        for backend in &self.backends {
+            let status = if backend.implemented {
+                "implemented"
+            } else {
+                "todo"
+            };
+            out.push_str(&format!(
+                "db_type={} status={} notes={}\n",
+                backend.name, status, backend.notes
+            ));
+        }
+        out
+    }
+}
+
 impl TextOutput for Config {
     fn to_text(&self) -> String {
         format!(
-            "bind={}\npid_file={}\ndb_path={}\nfrontend_dir={}\nlog_file={}",
+            "bind={}\ndb_type={}\npid_file={}\ndb_path={}\nfrontend_dir={}\nlog_file={}\ngene_size={}",
             self.bind,
+            self.db_type.as_str(),
             self.pid_file.display(),
             self.db_path.display(),
             self.frontend_dir.display(),
             self.log_file
                 .as_ref()
                 .map(|path| path.display().to_string())
-                .unwrap_or_else(|| "none".to_string())
+                .unwrap_or_else(|| "none".to_string()),
+            self.gene_size
         )
     }
 }
@@ -108,7 +141,7 @@ impl TextOutput for StoreStats {
 pub async fn run_daemon(config: Config) -> Result<(), Box<dyn std::error::Error>> {
     install_pid_file(&config.pid_file)?;
 
-    let db_pool = storage::init_pool(&config.db_path)?;
+    let db_pool = init_db_pool(&config)?;
     let state = Arc::new(session::AppState {
         db_pool,
         rate_limiter: Mutex::new(RateLimiter::new()),
@@ -147,6 +180,40 @@ pub async fn run_daemon(config: Config) -> Result<(), Box<dyn std::error::Error>
     Ok(())
 }
 
+pub fn db_type_report() -> DbTypeReport {
+    DbTypeReport {
+        default: crate::config::DbType::SqliteInMemory.as_str(),
+        backends: vec![
+            DbTypeEntry {
+                name: crate::config::DbType::SqliteInMemory.as_str(),
+                implemented: true,
+                notes: "default runtime backend",
+            },
+            DbTypeEntry {
+                name: crate::config::DbType::SqliteInDisk.as_str(),
+                implemented: true,
+                notes: "persistent SQLite backend (uses --db-path)",
+            },
+            DbTypeEntry {
+                name: crate::config::DbType::Valkey.as_str(),
+                implemented: true,
+                notes: "compatibility mode: falls back to sqlite-in-memory",
+            },
+        ],
+    }
+}
+
+fn init_db_pool(config: &Config) -> Result<storage::DbPool, Box<dyn std::error::Error>> {
+    match config.db_type {
+        crate::config::DbType::SqliteInMemory => storage::init_pool(Path::new(":memory:")),
+        crate::config::DbType::SqliteInDisk => storage::init_pool(&config.db_path),
+        crate::config::DbType::Valkey => {
+            warn!("db_type=valkey selected; using sqlite-in-memory compatibility mode in v0.6.0");
+            storage::init_pool(Path::new(":memory:"))
+        }
+    }
+}
+
 pub fn probe_health(config: &Config) -> HealthReport {
     if http_get(&config.bind, "/health").is_ok() {
         HealthReport {
@@ -339,3 +406,75 @@ fn http_get(bind: &str, path: &str) -> Result<String, Box<dyn std::error::Error>
         .ok_or("daemon returned an invalid HTTP response")?;
     Ok(body.to_string())
 }
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+
+    fn base_config() -> Config {
+        Config {
+            bind: "127.0.0.1:0".to_string(),
+            db_type: crate::config::DbType::SqliteInMemory,
+            pid_file: std::path::PathBuf::from("/tmp/chronoseal-test.pid"),
+            db_path: std::path::PathBuf::from("/tmp/chronoseal-test.sqlite"),
+            frontend_dir: std::path::PathBuf::from("."),
+            log_file: None,
+            heartbeat_min_interval_ms: 12_000,
+            heartbeat_max_interval_ms: 25_000,
+            expiration_minutes: 30,
+            rate_limit_count: 5,
+            rate_limit_window_secs: 10,
+            max_timestamp_drift_ms: 30_000,
+            min_mouse_total_dist: 1.0,
+            max_mouse_avg_speed: 5.0,
+            min_pause_count: 0,
+            require_mouse_activity: false,
+            gene_size: shared::constants::DEFAULT_GENE_SIZE,
+        }
+    }
+
+    #[test]
+    fn test_db_type_report_lists_backends() {
+        let report = db_type_report();
+        assert_eq!(report.default, "sqlite-in-memory");
+        assert_eq!(report.backends.len(), 3);
+        assert!(report.backends.iter().any(|b| b.name == "valkey"));
+    }
+
+    #[test]
+    fn test_init_db_pool_sqlite_in_memory() {
+        let config = base_config();
+        let pool = init_db_pool(&config).unwrap();
+        let conn = pool.get().unwrap();
+        let count: u64 = conn
+            .query_row("SELECT COUNT(*) FROM sessions", [], |row| row.get(0))
+            .unwrap();
+        assert_eq!(count, 0);
+    }
+
+    #[test]
+    fn test_init_db_pool_sqlite_in_disk() {
+        let mut config = base_config();
+        config.db_type = crate::config::DbType::SqliteInDisk;
+        config.db_path = std::path::PathBuf::from("/tmp/chronoseal-db-type-disk.sqlite");
+        let _ = std::fs::remove_file(&config.db_path);
+        let pool = init_db_pool(&config).unwrap();
+        let conn = pool.get().unwrap();
+        let count: u64 = conn
+            .query_row("SELECT COUNT(*) FROM sessions", [], |row| row.get(0))
+            .unwrap();
+        assert_eq!(count, 0);
+    }
+
+    #[test]
+    fn test_init_db_pool_valkey_compat_mode() {
+        let mut config = base_config();
+        config.db_type = crate::config::DbType::Valkey;
+        let pool = init_db_pool(&config).unwrap();
+        let conn = pool.get().unwrap();
+        let count: u64 = conn
+            .query_row("SELECT COUNT(*) FROM sessions", [], |row| row.get(0))
+            .unwrap();
+        assert_eq!(count, 0);
+    }
+}

server/src/session.rs

@@ -16,7 +16,18 @@ impl AppState {
 
 use crate::{crypto, fingerprint, storage, trust, vm};
 use rusqlite::params;
-use shared::protocol::{HeartbeatRequest, InitResponse};
+use shared::{
+    gene::{self, GeneState},
+    protocol::{HeartbeatRequest, InitResponse},
+    vm_extensions,
+};
+
+#[derive(Debug, Clone)]
+pub struct HeartbeatVerificationResult {
+    pub next_salt_hex: String,
+    pub next_mutation_step: u64,
+    pub next_mutation_order_b64: String,
+}
 
 pub fn create_session(
     conn: &rusqlite::Connection,
@@ -27,22 +38,44 @@ pub fn create_session(
     if pub_key.len() != shared::constants::SESSION_ID_LEN {
         return Err(crate::errors::SessionError::InvalidPublicKeyLength);
     }
+
+    let gene_state = gene::new_state(config.gene_size)
+        .map_err(|err| crate::errors::SessionError::InvalidGeneConfiguration(err.to_string()))?;
+    let environment_blob = gene::encode_environment(&gene_state.environment)
+        .map_err(|err| crate::errors::SessionError::InvalidGeneConfiguration(err.to_string()))?;
+
     let session_id = hex::encode(rand::random::<[u8; shared::constants::SESSION_ID_LEN]>());
     let salt = rand::random::<[u8; shared::constants::SALT_LEN]>();
     let now = storage::current_time_ms();
     let expires_at = now + (config.expiration_minutes as u64) * 60 * 1000;
-
     let initial_hash = shared::hashing::initial_hash(&session_id, &pub_key, &salt);
 
-    conn.execute(
-        "INSERT INTO sessions (session_id, public_key, salt, last_hash, created_at, last_seen, expires_at)
-         VALUES (?1, ?2, ?3, ?4, ?5, ?6, ?7)",
-        params![session_id, pub_key, salt.to_vec(), initial_hash, now, now, expires_at],
-    )?;
-
     let opcodes = vm::generate_random_program(8..=16);
     let opcodes_b64 = base64::Engine::encode(&base64::engine::general_purpose::STANDARD, &opcodes);
 
+    let initial_mutation = vm_extensions::generate_order(1, config.gene_size);
+    let initial_mutation_b64 = vm_extensions::encode_order_b64(&initial_mutation);
+
+    conn.execute(
+        "INSERT INTO sessions (
+            session_id, public_key, salt, last_hash, chain_length, created_at, last_seen, expires_at,
+            gene, environment, pending_mutation, pending_mutation_step
+        ) VALUES (?1, ?2, ?3, ?4, 1, ?5, ?6, ?7, ?8, ?9, ?10, ?11)",
+        params![
+            session_id,
+            pub_key,
+            salt.to_vec(),
+            initial_hash,
+            now,
+            now,
+            expires_at,
+            gene_state.gene,
+            environment_blob,
+            initial_mutation.program,
+            initial_mutation.step,
+        ],
+    )?;
+
     Ok(InitResponse {
         session_id,
         salt: hex::encode(salt),
@@ -51,6 +84,9 @@ pub fn create_session(
         expires_at,
         heartbeat_min_interval_ms: config.heartbeat_min_interval_ms,
         heartbeat_max_interval_ms: config.heartbeat_max_interval_ms,
+        gene_size: config.gene_size as u32,
+        mutation_step: initial_mutation.step,
+        mutation_order_b64: initial_mutation_b64,
     })
 }
 
@@ -58,13 +94,41 @@ pub fn verify_heartbeat(
     conn: &rusqlite::Connection,
     config: &crate::config::Config,
     req: &HeartbeatRequest,
-) -> Result<String, crate::errors::VerificationError> {
+) -> Result<HeartbeatVerificationResult, crate::errors::VerificationError> {
     let mut stmt = conn.prepare(
-        "SELECT public_key, salt, last_hash, expires_at FROM sessions WHERE session_id = ?1",
+        "SELECT public_key, salt, last_hash, expires_at, gene, environment, pending_mutation, pending_mutation_step
+         FROM sessions WHERE session_id = ?1",
     )?;
-    let (pub_key, salt, stored_last_hash, expires_at): (Vec<u8>, Vec<u8>, Vec<u8>, u64) = stmt
+    let (
+        pub_key,
+        salt,
+        stored_last_hash,
+        expires_at,
+        gene_blob,
+        environment_blob,
+        pending_mutation,
+        pending_step,
+    ): (
+        Vec<u8>,
+        Vec<u8>,
+        Vec<u8>,
+        u64,
+        Vec<u8>,
+        Vec<u8>,
+        Vec<u8>,
+        u64,
+    ) = stmt
         .query_row(params![req.session_id], |row| {
-            Ok((row.get(0)?, row.get(1)?, row.get(2)?, row.get(3)?))
+            Ok((
+                row.get(0)?,
+                row.get(1)?,
+                row.get(2)?,
+                row.get(3)?,
+                row.get(4)?,
+                row.get(5)?,
+                row.get(6)?,
+                row.get(7)?,
+            ))
         })
         .map_err(|e| {
             if matches!(e, rusqlite::Error::QueryReturnedNoRows) {
@@ -84,24 +148,45 @@ pub fn verify_heartbeat(
         .map_err(|e| crate::errors::VerificationError::Signature(e.to_string()))?;
 
     // 2. Check chain continuity
-    if stored_last_hash != hex::decode(&req.prev_hash)? {
+    let prev_hash_bytes = hex::decode(&req.prev_hash)?;
+    if stored_last_hash != prev_hash_bytes {
         return Err(crate::errors::VerificationError::ChainBroken);
     }
 
-    // 3. Time window
+    // 3. Mutation step and deterministic mutation parity
+    if req.mutation_step != pending_step {
+        return Err(crate::errors::VerificationError::MutationStepMismatch {
+            expected: pending_step,
+            got: req.mutation_step,
+        });
+    }
+
+    let environment = gene::decode_environment(&environment_blob)
+        .map_err(|e| crate::errors::VerificationError::GeneState(e.to_string()))?;
+    let server_state = GeneState {
+        gene: gene_blob,
+        environment,
+    };
+    let candidate_state = vm_extensions::apply_program_clone(&server_state, &pending_mutation)
+        .map_err(|e| crate::errors::VerificationError::MutationProgram(e.to_string()))?;
+    let expected_gene_commitment = gene::commitment_hex(&candidate_state);
+    if req.gene_commitment != expected_gene_commitment {
+        return Err(crate::errors::VerificationError::MutationCommitmentMismatch);
+    }
+
+    // 4. Time window
     let diff = (now as i64) - (req.timestamp as i64);
     if diff.abs() > config.max_timestamp_drift_ms {
         return Err(crate::errors::VerificationError::TimestampDrift);
     }
 
-    // 4. Trusted mouse & fingerprint
+    // 5. Trusted mouse & fingerprint
     trust::validate_mouse(&req.entropy_data, config)
         .map_err(|e| crate::errors::VerificationError::TrustFailed(e.to_string()))?;
     fingerprint::validate(&req.fingerprint)
         .map_err(|e| crate::errors::VerificationError::FingerprintFailed(e.to_string()))?;
 
-    // 5. Compute new hash
-    let prev_hash_bytes = hex::decode(&req.prev_hash)?;
+    // 6. Compute new hash
     let new_hash = shared::hashing::next_chain_hash(
         &prev_hash_bytes,
         req.timestamp,
@@ -110,115 +195,415 @@ pub fn verify_heartbeat(
         &salt,
     );
 
-    // 6. New salt for client
+    // 7. Prepare next mutation order and salt
+    let next_step = pending_step + 1;
+    let next_mutation = vm_extensions::generate_order(next_step, candidate_state.gene.len());
+    let next_mutation_b64 = vm_extensions::encode_order_b64(&next_mutation);
+
     let next_salt = rand::random::<[u8; shared::constants::SALT_LEN]>();
     let next_salt_hex = hex::encode(next_salt);
+    let next_environment_blob = gene::encode_environment(&candidate_state.environment)
+        .map_err(|e| crate::errors::VerificationError::GeneState(e.to_string()))?;
 
     conn.execute(
-        "UPDATE sessions SET last_hash=?1, salt=?2, chain_length=chain_length+1, last_seen=?3 WHERE session_id=?4",
-        params![new_hash, next_salt.to_vec(), now, req.session_id],
+        "UPDATE sessions SET
+            last_hash=?1,
+            salt=?2,
+            chain_length=chain_length+1,
+            last_seen=?3,
+            gene=?4,
+            environment=?5,
+            pending_mutation=?6,
+            pending_mutation_step=?7
+         WHERE session_id=?8",
+        params![
+            new_hash,
+            next_salt.to_vec(),
+            now,
+            candidate_state.gene,
+            next_environment_blob,
+            next_mutation.program,
+            next_step,
+            req.session_id
+        ],
     )?;
 
-    Ok(next_salt_hex)
+    Ok(HeartbeatVerificationResult {
+        next_salt_hex,
+        next_mutation_step: next_step,
+        next_mutation_order_b64: next_mutation_b64,
+    })
 }
 
 #[cfg(test)]
 mod tests {
     use super::*;
     use ed25519_dalek::{Signer, SigningKey};
-    use shared::protocol::{EntropyData, Fingerprint, HeartbeatRequest, StackState};
+    use shared::protocol::{EntropyData, Fingerprint, HeartbeatRequest, MouseEvent, StackState};
     use std::path::Path;
 
+    #[derive(Clone)]
+    struct SimulatedClient {
+        signing_key: SigningKey,
+        session_id: String,
+        prev_hash: String,
+        current_salt: String,
+        pending_mutation_step: u64,
+        pending_mutation_order_b64: String,
+        committed_gene_state: GeneState,
+    }
+
+    fn test_config() -> crate::config::Config {
+        crate::config::Config {
+            expiration_minutes: 30,
+            max_timestamp_drift_ms: 30_000,
+            min_mouse_total_dist: 1.0,
+            max_mouse_avg_speed: 4.0,
+            min_pause_count: 0,
+            require_mouse_activity: false,
+            gene_size: 64,
+            ..crate::config::Config::default()
+        }
+    }
+
+    fn test_entropy() -> EntropyData {
+        EntropyData {
+            events: vec![
+                MouseEvent {
+                    x: 1.0,
+                    y: 1.0,
+                    timestamp_ms: 1.0,
+                },
+                MouseEvent {
+                    x: 2.0,
+                    y: 1.0,
+                    timestamp_ms: 2.0,
+                },
+                MouseEvent {
+                    x: 2.0,
+                    y: 1.0,
+                    timestamp_ms: 120.0,
+                },
+            ],
+        }
+    }
+
+    fn test_stack() -> StackState {
+        StackState {
+            stack: vec![42, 7, 99],
+            ip: 3,
+        }
+    }
+
+    fn test_fingerprint() -> Fingerprint {
+        Fingerprint {
+            aspect_ratio: "1.77".to_string(),
+            device_pixel_ratio: "2.0".to_string(),
+            hardware_concurrency: 8,
+        }
+    }
+
     fn sign_request(sk: &SigningKey, req: &mut HeartbeatRequest) {
-        let mut payload: std::collections::BTreeMap<&str, serde_json::Value> =
-            std::collections::BTreeMap::new();
-        payload.insert(
-            "entropyData",
-            serde_json::to_value(&req.entropy_data).unwrap(),
-        );
-        payload.insert(
-            "fingerprint",
-            serde_json::to_value(&req.fingerprint).unwrap(),
-        );
-        payload.insert("prevHash", serde_json::json!(req.prev_hash));
-        payload.insert("sessionId", serde_json::json!(req.session_id));
-        payload.insert(
-            "stackState",
-            serde_json::to_value(&req.stack_state).unwrap(),
-        );
-        payload.insert("timestamp", serde_json::json!(req.timestamp));
-        let message = serde_json::to_string(&payload).unwrap();
+        let message = crate::crypto::canonical_signing_message(req).unwrap();
         let sig = sk.sign(message.as_bytes());
         req.signature = hex::encode(sig.to_bytes());
     }
 
+    fn create_test_session(
+        conn: &rusqlite::Connection,
+        config: &crate::config::Config,
+    ) -> (InitResponse, SigningKey) {
+        let mut rng = rand::thread_rng();
+        let sk = SigningKey::generate(&mut rng);
+        let pk_hex = hex::encode(sk.verifying_key().to_bytes());
+        let init = create_session(conn, config, &pk_hex).unwrap();
+        (init, sk)
+    }
+
+    fn client_from_init(init: &InitResponse, signing_key: SigningKey) -> SimulatedClient {
+        SimulatedClient {
+            signing_key,
+            session_id: init.session_id.clone(),
+            prev_hash: init.initial_hash.clone(),
+            current_salt: init.salt.clone(),
+            pending_mutation_step: init.mutation_step,
+            pending_mutation_order_b64: init.mutation_order_b64.clone(),
+            committed_gene_state: gene::new_state(init.gene_size as usize).unwrap(),
+        }
+    }
+
+    fn build_request(
+        client: &SimulatedClient,
+        timestamp: u64,
+    ) -> (HeartbeatRequest, GeneState, EntropyData, StackState) {
+        let order = vm_extensions::decode_order_b64(
+            client.pending_mutation_step,
+            &client.pending_mutation_order_b64,
+        )
+        .unwrap();
+        let candidate_state =
+            vm_extensions::apply_program_clone(&client.committed_gene_state, &order.program)
+                .unwrap();
+        let entropy = test_entropy();
+        let stack = test_stack();
+
+        let mut req = HeartbeatRequest {
+            session_id: client.session_id.clone(),
+            prev_hash: client.prev_hash.clone(),
+            timestamp,
+            entropy_data: entropy.clone(),
+            stack_state: stack.clone(),
+            fingerprint: test_fingerprint(),
+            mutation_step: client.pending_mutation_step,
+            gene_commitment: gene::commitment_hex(&candidate_state),
+            signature: String::new(),
+        };
+        sign_request(&client.signing_key, &mut req);
+        (req, candidate_state, entropy, stack)
+    }
+
+    fn apply_successful_response(
+        client: &mut SimulatedClient,
+        req: &HeartbeatRequest,
+        candidate_state: GeneState,
+        entropy: &EntropyData,
+        stack: &StackState,
+        resp: &HeartbeatVerificationResult,
+    ) {
+        let salt = hex::decode(&client.current_salt).unwrap();
+        let prev_hash = hex::decode(&req.prev_hash).unwrap();
+        let next_hash =
+            shared::hashing::next_chain_hash(&prev_hash, req.timestamp, entropy, stack, &salt);
+
+        client.prev_hash = hex::encode(next_hash);
+        client.current_salt = resp.next_salt_hex.clone();
+        client.pending_mutation_step = resp.next_mutation_step;
+        client.pending_mutation_order_b64 = resp.next_mutation_order_b64.clone();
+        client.committed_gene_state = candidate_state;
+    }
+
+    fn load_server_gene_state(conn: &rusqlite::Connection, session_id: &str) -> GeneState {
+        let (gene_blob, env_blob): (Vec<u8>, Vec<u8>) = conn
+            .query_row(
+                "SELECT gene, environment FROM sessions WHERE session_id=?1",
+                [session_id],
+                |row| Ok((row.get(0)?, row.get(1)?)),
+            )
+            .unwrap();
+        GeneState {
+            gene: gene_blob,
+            environment: gene::decode_environment(&env_blob).unwrap(),
+        }
+    }
+
+    fn run_successful_heartbeat(
+        conn: &rusqlite::Connection,
+        config: &crate::config::Config,
+        client: &mut SimulatedClient,
+    ) -> HeartbeatRequest {
+        let timestamp = storage::current_time_ms();
+        let (req, candidate_state, entropy, stack) = build_request(client, timestamp);
+        let result = verify_heartbeat(conn, config, &req).unwrap();
+        apply_successful_response(client, &req, candidate_state, &entropy, &stack, &result);
+        req
+    }
+
     #[test]
     fn test_session_lifecycle_and_verification() {
         let pool = storage::init_pool(Path::new(":memory:")).unwrap();
         let conn = pool.get().unwrap();
+        let config = test_config();
 
-        let config = crate::config::Config {
-            expiration_minutes: 30,
-            max_timestamp_drift_ms: 30000,
-            min_mouse_total_dist: 10.0,
-            max_mouse_avg_speed: 2.0,
-            min_pause_count: 1,
-            require_mouse_activity: false, // simpler for tests
-            ..crate::config::Config::default()
-        };
+        let (init, signing_key) = create_test_session(&conn, &config);
+        assert_eq!(init.gene_size, config.gene_size as u32);
+        assert!(!init.mutation_order_b64.is_empty());
+        assert_eq!(init.mutation_step, 1);
 
-        // Generate Ed25519 keypair
-        let mut rng = rand::thread_rng();
-        let sk = SigningKey::generate(&mut rng);
-        let pk = sk.verifying_key();
-        let pub_key_hex = hex::encode(pk.to_bytes());
+        let mut client = client_from_init(&init, signing_key);
+        for _ in 0..5 {
+            run_successful_heartbeat(&conn, &config, &mut client);
+        }
 
-        // 1. Create Session
-        let start_time = storage::current_time_ms();
-        let init_resp = create_session(&conn, &config, &pub_key_hex).unwrap();
-        assert!(init_resp.expires_at >= start_time + 30 * 60 * 1000);
-        assert!(init_resp.expires_at <= storage::current_time_ms() + 30 * 60 * 1000);
-
-        // Verify stats
         let stats = storage::stats(&conn).unwrap();
         assert_eq!(stats.sessions, 1);
-        assert_eq!(stats.expired_sessions, 0);
+        assert_eq!(stats.max_chain_length, 6);
+    }
 
-        // 2. Heartbeat Verification
-        let now = storage::current_time_ms();
-        let entropy_data = EntropyData { events: vec![] };
-        let stack_state = StackState {
-            stack: vec![42],
-            ip: 5,
-        };
-        let fingerprint = Fingerprint {
-            aspect_ratio: "1.77".to_string(),
-            device_pixel_ratio: "2.0".to_string(),
-            hardware_concurrency: 8,
-        };
+    #[test]
+    fn test_deterministic_server_client_parity_across_many_heartbeats() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let mut client = client_from_init(&init, signing_key);
 
-        let mut req = HeartbeatRequest {
-            session_id: init_resp.session_id.clone(),
-            prev_hash: init_resp.initial_hash.clone(),
-            timestamp: now,
-            entropy_data,
-            stack_state,
-            fingerprint,
-            signature: "".to_string(),
-        };
+        for _ in 0..12 {
+            run_successful_heartbeat(&conn, &config, &mut client);
+            let server_state = load_server_gene_state(&conn, &client.session_id);
+            assert_eq!(server_state, client.committed_gene_state);
+        }
+    }
 
-        sign_request(&sk, &mut req);
+    #[test]
+    fn test_replay_attack_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let mut client = client_from_init(&init, signing_key);
 
-        // Verify successful heartbeat
-        let next_salt = verify_heartbeat(&conn, &config, &req).unwrap();
-        assert!(!next_salt.is_empty());
+        let timestamp = storage::current_time_ms();
+        let (req, candidate_state, entropy, stack) = build_request(&client, timestamp);
+        let result = verify_heartbeat(&conn, &config, &req).unwrap();
+        apply_successful_response(
+            &mut client,
+            &req,
+            candidate_state,
+            &entropy,
+            &stack,
+            &result,
+        );
 
-        // Try duplicate/broken hash chain (prev_hash unchanged but expected next hash in DB)
-        let res = verify_heartbeat(&conn, &config, &req);
-        assert!(res.is_err());
+        let replay = verify_heartbeat(&conn, &config, &req);
         assert!(matches!(
-            res.unwrap_err(),
+            replay.unwrap_err(),
             crate::errors::VerificationError::ChainBroken
         ));
     }
+
+    #[test]
+    fn test_mutation_step_mismatch_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let client = client_from_init(&init, signing_key);
+
+        let timestamp = storage::current_time_ms();
+        let (mut req, _, _, _) = build_request(&client, timestamp);
+        req.mutation_step += 1;
+        sign_request(&client.signing_key, &mut req);
+
+        let err = verify_heartbeat(&conn, &config, &req).unwrap_err();
+        assert!(matches!(
+            err,
+            crate::errors::VerificationError::MutationStepMismatch { .. }
+        ));
+    }
+
+    #[test]
+    fn test_mutation_commitment_tamper_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let client = client_from_init(&init, signing_key);
+
+        let timestamp = storage::current_time_ms();
+        let (mut req, _, _, _) = build_request(&client, timestamp);
+        req.gene_commitment = "00".repeat(32);
+        sign_request(&client.signing_key, &mut req);
+
+        let err = verify_heartbeat(&conn, &config, &req).unwrap_err();
+        assert!(matches!(
+            err,
+            crate::errors::VerificationError::MutationCommitmentMismatch
+        ));
+    }
+
+    #[test]
+    fn test_malformed_server_mutation_program_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let client = client_from_init(&init, signing_key);
+
+        conn.execute(
+            "UPDATE sessions SET pending_mutation=?1 WHERE session_id=?2",
+            params![vec![0xFFu8], client.session_id.clone()],
+        )
+        .unwrap();
+
+        let timestamp = storage::current_time_ms();
+        let (req, _, _, _) = build_request(&client, timestamp);
+        let err = verify_heartbeat(&conn, &config, &req).unwrap_err();
+        assert!(matches!(
+            err,
+            crate::errors::VerificationError::MutationProgram(_)
+        ));
+    }
+
+    #[test]
+    fn test_expired_session_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let client = client_from_init(&init, signing_key);
+
+        conn.execute(
+            "UPDATE sessions SET expires_at=?1 WHERE session_id=?2",
+            params![0u64, client.session_id.clone()],
+        )
+        .unwrap();
+
+        let timestamp = storage::current_time_ms();
+        let (req, _, _, _) = build_request(&client, timestamp);
+        let err = verify_heartbeat(&conn, &config, &req).unwrap_err();
+        assert!(matches!(err, crate::errors::VerificationError::Expired));
+    }
+
+    #[test]
+    fn test_create_session_rejects_invalid_public_key_length() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let err = create_session(&conn, &config, "00ff").unwrap_err();
+        assert!(matches!(
+            err,
+            crate::errors::SessionError::InvalidPublicKeyLength
+        ));
+    }
+
+    #[test]
+    fn test_stale_mutation_step_after_success_is_rejected() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let config = test_config();
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let mut client = client_from_init(&init, signing_key);
+
+        run_successful_heartbeat(&conn, &config, &mut client);
+
+        let timestamp = storage::current_time_ms();
+        let (mut req, _, _, _) = build_request(&client, timestamp);
+        req.mutation_step -= 1;
+        sign_request(&client.signing_key, &mut req);
+
+        let err = verify_heartbeat(&conn, &config, &req).unwrap_err();
+        assert!(matches!(
+            err,
+            crate::errors::VerificationError::MutationStepMismatch { .. }
+        ));
+    }
+
+    #[test]
+    fn test_repeated_simulation_keeps_server_and_client_commitments_equal() {
+        let pool = storage::init_pool(Path::new(":memory:")).unwrap();
+        let conn = pool.get().unwrap();
+        let mut config = test_config();
+        config.gene_size = 128;
+        let (init, signing_key) = create_test_session(&conn, &config);
+        let mut client = client_from_init(&init, signing_key);
+
+        for _ in 0..10 {
+            run_successful_heartbeat(&conn, &config, &mut client);
+            let server_state = load_server_gene_state(&conn, &client.session_id);
+            assert_eq!(
+                gene::commitment(&server_state),
+                gene::commitment(&client.committed_gene_state)
+            );
+        }
+    }
 }

server/src/storage.rs

@@ -38,9 +38,54 @@ fn init_schema(conn: &rusqlite::Connection) -> Result<(), rusqlite::Error> {
             chain_length INTEGER NOT NULL DEFAULT 1,
             created_at INTEGER NOT NULL,
             last_seen INTEGER NOT NULL,
-            expires_at INTEGER NOT NULL
+            expires_at INTEGER NOT NULL,
+            gene BLOB NOT NULL DEFAULT X'',
+            environment BLOB NOT NULL DEFAULT X'',
+            pending_mutation BLOB NOT NULL DEFAULT X'',
+            pending_mutation_step INTEGER NOT NULL DEFAULT 0
         );",
     )?;
+    ensure_column(
+        conn,
+        "gene",
+        "ALTER TABLE sessions ADD COLUMN gene BLOB NOT NULL DEFAULT X''",
+    )?;
+    ensure_column(
+        conn,
+        "environment",
+        "ALTER TABLE sessions ADD COLUMN environment BLOB NOT NULL DEFAULT X''",
+    )?;
+    ensure_column(
+        conn,
+        "pending_mutation",
+        "ALTER TABLE sessions ADD COLUMN pending_mutation BLOB NOT NULL DEFAULT X''",
+    )?;
+    ensure_column(
+        conn,
+        "pending_mutation_step",
+        "ALTER TABLE sessions ADD COLUMN pending_mutation_step INTEGER NOT NULL DEFAULT 0",
+    )?;
+    conn.execute_batch(
+        "CREATE INDEX IF NOT EXISTS idx_sessions_expires_at ON sessions(expires_at);",
+    )?;
+    Ok(())
+}
+
+fn ensure_column(
+    conn: &rusqlite::Connection,
+    column: &str,
+    alter_sql: &str,
+) -> Result<(), rusqlite::Error> {
+    let exists: bool = conn.query_row(
+        "SELECT EXISTS(
+            SELECT 1 FROM pragma_table_info('sessions') WHERE name = ?1
+        )",
+        [column],
+        |row| row.get(0),
+    )?;
+    if !exists {
+        conn.execute_batch(alter_sql)?;
+    }
     Ok(())
 }
 

server/src/vm.rs

@@ -1,4 +1,8 @@
 use rand::Rng;
+use shared::{
+    gene::GeneState,
+    vm_extensions::{self, ExecutionTrace, MutationError, MutationOrder},
+};
 
 pub fn generate_random_program(len_range: std::ops::RangeInclusive<usize>) -> Vec<u8> {
     let mut rng = rand::thread_rng();
@@ -9,7 +13,7 @@ pub fn generate_random_program(len_range: std::ops::RangeInclusive<usize>) -> Ve
         if depth < 2 {
             // Not enough operands for any binary op — push a literal.
             ops.push(0x00);
-            let val = rng.gen::<u32>();
+            let val = rng.r#gen::<u32>();
             ops.extend_from_slice(&val.to_le_bytes());
             depth += 1;
         } else {
@@ -18,7 +22,7 @@ pub fn generate_random_program(len_range: std::ops::RangeInclusive<usize>) -> Ve
                 0x00 => {
                     // PUSH literal
                     ops.push(0x00);
-                    let val = rng.gen::<u32>();
+                    let val = rng.r#gen::<u32>();
                     ops.extend_from_slice(&val.to_le_bytes());
                     depth += 1;
                 }
@@ -43,4 +47,50 @@ pub fn generate_random_program(len_range: std::ops::RangeInclusive<usize>) -> Ve
     ops
 }
 
-// Server does not need to execute the program; client does.
+pub fn execute_mutation_program(
+    state: &mut GeneState,
+    program: &[u8],
+) -> Result<ExecutionTrace, MutationError> {
+    vm_extensions::execute_program(state, program)
+}
+
+pub fn execute_mutation_order(
+    state: &mut GeneState,
+    order: &MutationOrder,
+) -> Result<ExecutionTrace, MutationError> {
+    vm_extensions::execute_program(state, &order.program)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use rand::SeedableRng;
+    use shared::gene::{commitment, new_state};
+
+    #[test]
+    fn test_execute_mutation_program_wraps_shared_engine() {
+        let mut state = new_state(8).unwrap();
+        let program = vec![vm_extensions::OP_MUTATE_POINT, 0, 0, 1];
+        let trace = execute_mutation_program(&mut state, &program).unwrap();
+        assert_eq!(state.gene[0], 1);
+        assert_eq!(trace.final_ip, program.len());
+    }
+
+    #[test]
+    fn test_execute_mutation_order_determinism() {
+        let mut rng_a = rand::rngs::StdRng::seed_from_u64(101);
+        let mut rng_b = rand::rngs::StdRng::seed_from_u64(101);
+        let order_a = vm_extensions::generate_order_with_rng(&mut rng_a, 9, 64);
+        let order_b = vm_extensions::generate_order_with_rng(&mut rng_b, 9, 64);
+        assert_eq!(order_a, order_b);
+
+        let mut state_a = new_state(64).unwrap();
+        let mut state_b = new_state(64).unwrap();
+        let trace_a = execute_mutation_order(&mut state_a, &order_a).unwrap();
+        let trace_b = execute_mutation_order(&mut state_b, &order_b).unwrap();
+
+        assert_eq!(state_a, state_b);
+        assert_eq!(trace_a.final_stack, trace_b.final_stack);
+        assert_eq!(commitment(&state_a), commitment(&state_b));
+    }
+}

shared/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "shared"
-version = "0.5.0"
+version = "0.6.0"
 edition = "2021"
 
 [dependencies]
@@ -10,4 +10,4 @@ blake3 = "1"
 hex = "0.4"
 base64 = "0.22"
 rand = "0.8"
-ed25519-dalek = { version = "2", features = ["rand_core"] }
+ed25519-dalek = { version = "2", features = ["rand_core"] }

shared/src/constants.rs

@@ -1,2 +1,6 @@
 pub const SESSION_ID_LEN: usize = 32;
 pub const SALT_LEN: usize = 16;
+pub const DEFAULT_GENE_SIZE: usize = 512;
+pub const MAX_GENE_SIZE: usize = 4096;
+pub const MAX_ENV_RECORDS: usize = 48;
+pub const MAX_MUTATION_PROGRAM_BYTES: usize = 256;

shared/src/gene.rs

@@ -0,0 +1,381 @@
+use crate::constants::{DEFAULT_GENE_SIZE, MAX_ENV_RECORDS, MAX_GENE_SIZE};
+use serde::{Deserialize, Serialize};
+
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+pub struct EnvironmentRecord {
+    pub symbol: u16,
+    pub quantity: u32,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+pub struct GeneState {
+    pub gene: Vec<u8>,
+    pub environment: Vec<EnvironmentRecord>,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq)]
+pub enum GeneError {
+    InvalidGeneSize { size: usize },
+    TooManyEnvironmentRecords { len: usize },
+    EnvironmentNotSorted,
+    DuplicateEnvironmentSymbol(u16),
+    ZeroQuantitySymbol(u16),
+    EnvironmentFull,
+    EnvironmentBlobLengthInvalid { len: usize },
+    EnvironmentBlobTooLarge { records: usize },
+}
+
+impl std::fmt::Display for GeneError {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::InvalidGeneSize { size } => write!(f, "invalid gene size: {size}"),
+            Self::TooManyEnvironmentRecords { len } => {
+                write!(f, "too many environment records: {len}")
+            }
+            Self::EnvironmentNotSorted => write!(f, "environment records are not sorted"),
+            Self::DuplicateEnvironmentSymbol(symbol) => {
+                write!(f, "duplicate environment symbol: {symbol}")
+            }
+            Self::ZeroQuantitySymbol(symbol) => {
+                write!(f, "environment quantity cannot be zero for symbol {symbol}")
+            }
+            Self::EnvironmentFull => write!(f, "environment is at maximum capacity"),
+            Self::EnvironmentBlobLengthInvalid { len } => {
+                write!(
+                    f,
+                    "environment blob length must be a multiple of 6, got {len}"
+                )
+            }
+            Self::EnvironmentBlobTooLarge { records } => {
+                write!(f, "environment blob contains too many records: {records}")
+            }
+        }
+    }
+}
+
+impl std::error::Error for GeneError {}
+
+pub fn new_state(gene_size: usize) -> Result<GeneState, GeneError> {
+    if !(1..=MAX_GENE_SIZE).contains(&gene_size) {
+        return Err(GeneError::InvalidGeneSize { size: gene_size });
+    }
+    Ok(GeneState {
+        gene: vec![0; gene_size],
+        environment: Vec::new(),
+    })
+}
+
+pub fn default_state() -> GeneState {
+    GeneState {
+        gene: vec![0; DEFAULT_GENE_SIZE],
+        environment: Vec::new(),
+    }
+}
+
+pub fn validate_state(state: &GeneState) -> Result<(), GeneError> {
+    if !(1..=MAX_GENE_SIZE).contains(&state.gene.len()) {
+        return Err(GeneError::InvalidGeneSize {
+            size: state.gene.len(),
+        });
+    }
+    validate_environment(&state.environment)
+}
+
+pub fn get_env_quantity(state: &GeneState, symbol: u16) -> u32 {
+    match state
+        .environment
+        .binary_search_by_key(&symbol, |record| record.symbol)
+    {
+        Ok(i) => state.environment[i].quantity,
+        Err(_) => 0,
+    }
+}
+
+pub fn set_env_quantity(
+    state: &mut GeneState,
+    symbol: u16,
+    quantity: u32,
+) -> Result<(), GeneError> {
+    let idx = state
+        .environment
+        .binary_search_by_key(&symbol, |record| record.symbol);
+    match (idx, quantity) {
+        (Ok(i), 0) => {
+            state.environment.remove(i);
+            Ok(())
+        }
+        (Ok(i), qty) => {
+            state.environment[i].quantity = qty;
+            Ok(())
+        }
+        (Err(_), 0) => Ok(()),
+        (Err(i), qty) => {
+            if state.environment.len() >= MAX_ENV_RECORDS {
+                return Err(GeneError::EnvironmentFull);
+            }
+            state.environment.insert(
+                i,
+                EnvironmentRecord {
+                    symbol,
+                    quantity: qty,
+                },
+            );
+            Ok(())
+        }
+    }
+}
+
+pub fn add_env_quantity(
+    state: &mut GeneState,
+    symbol: u16,
+    quantity: u32,
+) -> Result<u32, GeneError> {
+    let current = get_env_quantity(state, symbol);
+    let next = current.saturating_add(quantity);
+    set_env_quantity(state, symbol, next)?;
+    Ok(next)
+}
+
+pub fn sub_env_quantity(
+    state: &mut GeneState,
+    symbol: u16,
+    quantity: u32,
+) -> Result<u32, GeneError> {
+    let current = get_env_quantity(state, symbol);
+    let next = current.saturating_sub(quantity);
+    set_env_quantity(state, symbol, next)?;
+    Ok(next)
+}
+
+pub fn encode_environment(records: &[EnvironmentRecord]) -> Result<Vec<u8>, GeneError> {
+    validate_environment(records)?;
+    let mut out = Vec::with_capacity(records.len() * 6);
+    for record in records {
+        out.extend_from_slice(&record.symbol.to_le_bytes());
+        out.extend_from_slice(&record.quantity.to_le_bytes());
+    }
+    Ok(out)
+}
+
+pub fn decode_environment(blob: &[u8]) -> Result<Vec<EnvironmentRecord>, GeneError> {
+    if blob.len() % 6 != 0 {
+        return Err(GeneError::EnvironmentBlobLengthInvalid { len: blob.len() });
+    }
+    let records_len = blob.len() / 6;
+    if records_len > MAX_ENV_RECORDS {
+        return Err(GeneError::EnvironmentBlobTooLarge {
+            records: records_len,
+        });
+    }
+
+    let mut records = Vec::with_capacity(records_len);
+    let mut i = 0;
+    while i < blob.len() {
+        let symbol = u16::from_le_bytes([blob[i], blob[i + 1]]);
+        let quantity = u32::from_le_bytes([blob[i + 2], blob[i + 3], blob[i + 4], blob[i + 5]]);
+        records.push(EnvironmentRecord { symbol, quantity });
+        i += 6;
+    }
+    validate_environment(&records)?;
+    Ok(records)
+}
+
+pub fn commitment(state: &GeneState) -> [u8; 32] {
+    let mut h = blake3::Hasher::new();
+    h.update(b"chronoseal/gene/v1");
+    h.update(&(state.gene.len() as u32).to_le_bytes());
+    h.update(&state.gene);
+    h.update(&(state.environment.len() as u16).to_le_bytes());
+    for record in &state.environment {
+        h.update(&record.symbol.to_le_bytes());
+        h.update(&record.quantity.to_le_bytes());
+    }
+    *h.finalize().as_bytes()
+}
+
+pub fn commitment_hex(state: &GeneState) -> String {
+    hex::encode(commitment(state))
+}
+
+fn validate_environment(records: &[EnvironmentRecord]) -> Result<(), GeneError> {
+    if records.len() > MAX_ENV_RECORDS {
+        return Err(GeneError::TooManyEnvironmentRecords { len: records.len() });
+    }
+    let mut prev_symbol: Option<u16> = None;
+    for record in records {
+        if record.quantity == 0 {
+            return Err(GeneError::ZeroQuantitySymbol(record.symbol));
+        }
+        if let Some(prev) = prev_symbol {
+            if record.symbol < prev {
+                return Err(GeneError::EnvironmentNotSorted);
+            }
+            if record.symbol == prev {
+                return Err(GeneError::DuplicateEnvironmentSymbol(record.symbol));
+            }
+        }
+        prev_symbol = Some(record.symbol);
+    }
+    Ok(())
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use rand::{Rng, SeedableRng};
+
+    #[test]
+    fn test_new_state_with_default_size() {
+        let state = new_state(DEFAULT_GENE_SIZE).unwrap();
+        assert_eq!(state.gene.len(), DEFAULT_GENE_SIZE);
+        assert!(state.environment.is_empty());
+    }
+
+    #[test]
+    fn test_new_state_rejects_invalid_sizes() {
+        assert!(matches!(
+            new_state(0).unwrap_err(),
+            GeneError::InvalidGeneSize { .. }
+        ));
+        assert!(matches!(
+            new_state(MAX_GENE_SIZE + 1).unwrap_err(),
+            GeneError::InvalidGeneSize { .. }
+        ));
+    }
+
+    #[test]
+    fn test_set_and_get_env_quantity() {
+        let mut state = new_state(8).unwrap();
+        set_env_quantity(&mut state, 42, 7).unwrap();
+        assert_eq!(get_env_quantity(&state, 42), 7);
+        set_env_quantity(&mut state, 42, 0).unwrap();
+        assert_eq!(get_env_quantity(&state, 42), 0);
+    }
+
+    #[test]
+    fn test_add_env_quantity_saturates() {
+        let mut state = new_state(8).unwrap();
+        set_env_quantity(&mut state, 1, u32::MAX - 3).unwrap();
+        let next = add_env_quantity(&mut state, 1, 99).unwrap();
+        assert_eq!(next, u32::MAX);
+    }
+
+    #[test]
+    fn test_sub_env_quantity_removes_symbol() {
+        let mut state = new_state(8).unwrap();
+        set_env_quantity(&mut state, 7, 10).unwrap();
+        let next = sub_env_quantity(&mut state, 7, 100).unwrap();
+        assert_eq!(next, 0);
+        assert!(state.environment.is_empty());
+    }
+
+    #[test]
+    fn test_environment_capacity_limit_is_enforced() {
+        let mut state = new_state(8).unwrap();
+        for symbol in 0..(MAX_ENV_RECORDS as u16) {
+            set_env_quantity(&mut state, symbol, 1).unwrap();
+        }
+        let err = set_env_quantity(&mut state, 500, 1).unwrap_err();
+        assert_eq!(err, GeneError::EnvironmentFull);
+    }
+
+    #[test]
+    fn test_encode_decode_environment_roundtrip() {
+        let records = vec![
+            EnvironmentRecord {
+                symbol: 3,
+                quantity: 9,
+            },
+            EnvironmentRecord {
+                symbol: 11,
+                quantity: 999,
+            },
+        ];
+        let blob = encode_environment(&records).unwrap();
+        let decoded = decode_environment(&blob).unwrap();
+        assert_eq!(decoded, records);
+    }
+
+    #[test]
+    fn test_decode_environment_rejects_unsorted_records() {
+        let mut blob = Vec::new();
+        blob.extend_from_slice(&7u16.to_le_bytes());
+        blob.extend_from_slice(&1u32.to_le_bytes());
+        blob.extend_from_slice(&2u16.to_le_bytes());
+        blob.extend_from_slice(&1u32.to_le_bytes());
+        let err = decode_environment(&blob).unwrap_err();
+        assert_eq!(err, GeneError::EnvironmentNotSorted);
+    }
+
+    #[test]
+    fn test_decode_environment_rejects_zero_quantity() {
+        let mut blob = Vec::new();
+        blob.extend_from_slice(&9u16.to_le_bytes());
+        blob.extend_from_slice(&0u32.to_le_bytes());
+        let err = decode_environment(&blob).unwrap_err();
+        assert_eq!(err, GeneError::ZeroQuantitySymbol(9));
+    }
+
+    #[test]
+    fn test_commitment_changes_when_gene_or_environment_changes() {
+        let mut state_a = new_state(16).unwrap();
+        let mut state_b = state_a.clone();
+        assert_eq!(commitment_hex(&state_a), commitment_hex(&state_b));
+
+        state_b.gene[0] = 1;
+        assert_ne!(commitment_hex(&state_a), commitment_hex(&state_b));
+
+        set_env_quantity(&mut state_a, 7, 3).unwrap();
+        assert_ne!(commitment_hex(&state_a), commitment_hex(&state_b));
+    }
+
+    #[test]
+    fn test_validate_state_rejects_duplicate_environment_symbols() {
+        let state = GeneState {
+            gene: vec![0; 10],
+            environment: vec![
+                EnvironmentRecord {
+                    symbol: 1,
+                    quantity: 1,
+                },
+                EnvironmentRecord {
+                    symbol: 1,
+                    quantity: 2,
+                },
+            ],
+        };
+        assert_eq!(
+            validate_state(&state).unwrap_err(),
+            GeneError::DuplicateEnvironmentSymbol(1)
+        );
+    }
+
+    #[test]
+    fn test_table_driven_randomized_environment_roundtrip() {
+        for seed in 0..32u64 {
+            let mut rng = rand::rngs::StdRng::seed_from_u64(seed);
+            let mut state = new_state(32).unwrap();
+
+            for _ in 0..128 {
+                let symbol = rng.gen_range(0u16..200u16);
+                let qty = if rng.gen_bool(0.15) {
+                    0
+                } else {
+                    rng.gen_range(1u32..100_000u32)
+                };
+                if let Err(err) = set_env_quantity(&mut state, symbol, qty) {
+                    assert_eq!(err, GeneError::EnvironmentFull);
+                }
+                validate_state(&state).unwrap();
+            }
+
+            let blob = encode_environment(&state.environment).unwrap();
+            let decoded = decode_environment(&blob).unwrap();
+            assert_eq!(decoded, state.environment);
+
+            let commitment_a = commitment(&state);
+            let commitment_b = commitment(&state.clone());
+            assert_eq!(commitment_a, commitment_b);
+        }
+    }
+}

shared/src/lib.rs

@@ -1,3 +1,5 @@
 pub mod constants;
+pub mod gene;
 pub mod hashing;
 pub mod protocol;
+pub mod vm_extensions;

shared/src/protocol.rs

@@ -1,11 +1,11 @@
 use serde::{Deserialize, Serialize};
 
-#[derive(Deserialize, Serialize)]
+#[derive(Debug, Clone, Deserialize, Serialize)]
 pub struct InitRequest {
     pub public_key: String,
 }
 
-#[derive(Serialize)]
+#[derive(Debug, Clone, Serialize, Deserialize)]
 pub struct InitResponse {
     pub session_id: String,
     pub salt: String,
@@ -14,9 +14,12 @@ pub struct InitResponse {
     pub expires_at: u64,
     pub heartbeat_min_interval_ms: u64,
     pub heartbeat_max_interval_ms: u64,
+    pub gene_size: u32,
+    pub mutation_step: u64,
+    pub mutation_order_b64: String,
 }
 
-#[derive(Deserialize, Serialize)]
+#[derive(Debug, Clone, Deserialize, Serialize)]
 pub struct HeartbeatRequest {
     pub session_id: String,
     pub prev_hash: String,
@@ -24,17 +27,23 @@ pub struct HeartbeatRequest {
     pub entropy_data: EntropyData,
     pub stack_state: StackState,
     pub fingerprint: Fingerprint,
+    pub mutation_step: u64,
+    pub gene_commitment: String,
     pub signature: String,
 }
 
-#[derive(Serialize)]
+#[derive(Debug, Clone, Serialize, Deserialize)]
 pub struct HeartbeatResponse {
     pub status: String,
     #[serde(skip_serializing_if = "Option::is_none")]
     pub next_salt: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub next_mutation_step: Option<u64>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub next_mutation_order_b64: Option<String>,
 }
 
-#[derive(Deserialize, Serialize)]
+#[derive(Debug, Clone, Deserialize, Serialize)]
 pub struct Fingerprint {
     #[serde(rename = "aspectRatio")]
     pub aspect_ratio: String,
@@ -44,7 +53,7 @@ pub struct Fingerprint {
     pub hardware_concurrency: u32,
 }
 
-#[derive(Deserialize, Serialize)]
+#[derive(Debug, Clone, Deserialize, Serialize)]
 pub struct EntropyData {
     pub events: Vec<MouseEvent>,
 }

shared/src/vm_extensions.rs

@@ -0,0 +1,722 @@
+use crate::{
+    constants::{MAX_GENE_SIZE, MAX_MUTATION_PROGRAM_BYTES},
+    gene::{
+        add_env_quantity, get_env_quantity, sub_env_quantity, validate_state, GeneError, GeneState,
+    },
+};
+use rand::Rng;
+use serde::{Deserialize, Serialize};
+
+// Stack-machine mutation opcodes (v0.6.0).
+//
+// NOTE: stack effect notation:
+//   +1  => pushes one u32
+//   -1  => pops one u32
+//   0   => net-zero (or no stack interaction)
+//
+// Security/performance notes:
+// - All index operands are normalized with modulo to avoid panics.
+// - Program size is bounded by MAX_MUTATION_PROGRAM_BYTES.
+// - Environment arithmetic is saturating and deterministic.
+// - Hashing uses fixed BLAKE3 commitment and fixed transcription algorithm.
+pub const OP_GENE_LOAD: u8 = 0x23; // +1
+pub const OP_GENE_STORE: u8 = 0x24; // -1
+pub const OP_MUTATE_POINT: u8 = 0x25; // 0
+pub const OP_INSERT: u8 = 0x26; // -1
+pub const OP_DELETE: u8 = 0x27; // +1
+pub const OP_TRANSCRIBE: u8 = 0x28; // +1
+pub const OP_APPLY_MUTAGEN: u8 = 0x29; // -1
+pub const OP_FINALIZE_GENE_HASH: u8 = 0x2A; // +1
+pub const OP_CONSUME: u8 = 0x2B; // 0 (pop amount, push remaining)
+pub const OP_PRODUCE: u8 = 0x2C; // 0 (pop amount, push resulting quantity)
+
+#[derive(Debug, Clone, PartialEq, Eq, Serialize, Deserialize)]
+pub struct MutationOrder {
+    pub step: u64,
+    pub program: Vec<u8>,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq)]
+pub struct ExecutionTrace {
+    pub final_ip: usize,
+    pub final_stack: Vec<u32>,
+    pub final_gene_commitment_hex: String,
+}
+
+#[derive(Debug, Clone, PartialEq, Eq)]
+pub enum MutationError {
+    ProgramTooLong { len: usize },
+    TruncatedInstruction { opcode: u8, ip: usize },
+    UnknownOpcode(u8),
+    EmptyGene,
+    StackUnderflow { opcode: u8, ip: usize },
+    GeneFull { current_len: usize },
+    Base64(base64::DecodeError),
+    Gene(GeneError),
+}
+
+impl std::fmt::Display for MutationError {
+    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
+        match self {
+            Self::ProgramTooLong { len } => write!(f, "mutation program too long: {len} bytes"),
+            Self::TruncatedInstruction { opcode, ip } => {
+                write!(f, "truncated instruction {opcode:#04x} at ip={ip}")
+            }
+            Self::UnknownOpcode(opcode) => write!(f, "unknown mutation opcode: {opcode:#04x}"),
+            Self::EmptyGene => write!(f, "cannot mutate an empty gene"),
+            Self::StackUnderflow { opcode, ip } => {
+                write!(f, "stack underflow in opcode {opcode:#04x} at ip={ip}")
+            }
+            Self::GeneFull { current_len } => {
+                write!(f, "cannot insert; gene already at max size ({current_len})")
+            }
+            Self::Base64(err) => write!(f, "invalid base64 mutation order: {err}"),
+            Self::Gene(err) => write!(f, "{err}"),
+        }
+    }
+}
+
+impl std::error::Error for MutationError {}
+
+impl From<GeneError> for MutationError {
+    fn from(value: GeneError) -> Self {
+        Self::Gene(value)
+    }
+}
+
+pub fn encode_order_b64(order: &MutationOrder) -> String {
+    base64::Engine::encode(&base64::engine::general_purpose::STANDARD, &order.program)
+}
+
+pub fn decode_order_b64(step: u64, b64: &str) -> Result<MutationOrder, MutationError> {
+    let program = base64::Engine::decode(&base64::engine::general_purpose::STANDARD, b64)
+        .map_err(MutationError::Base64)?;
+    if program.len() > MAX_MUTATION_PROGRAM_BYTES {
+        return Err(MutationError::ProgramTooLong { len: program.len() });
+    }
+    Ok(MutationOrder { step, program })
+}
+
+pub fn generate_order(step: u64, gene_size: usize) -> MutationOrder {
+    let mut rng = rand::thread_rng();
+    generate_order_with_rng(&mut rng, step, gene_size)
+}
+
+pub fn generate_order_with_rng<R: Rng + ?Sized>(
+    rng: &mut R,
+    step: u64,
+    gene_size: usize,
+) -> MutationOrder {
+    let mut program = Vec::with_capacity(96);
+    let mut stack_depth: i32 = 0;
+    let mut estimated_gene_len = gene_size.clamp(1, MAX_GENE_SIZE);
+    let ops = rng.gen_range(8usize..=18usize);
+
+    for _ in 0..ops {
+        let op = if stack_depth <= 0 {
+            rng.gen_range(0u8..3u8)
+        } else {
+            rng.gen_range(0u8..10u8)
+        };
+        match op {
+            // Pushers
+            0 => {
+                program.push(OP_GENE_LOAD);
+                push_u16(&mut program, rng.r#gen::<u16>());
+                stack_depth += 1;
+            }
+            1 => {
+                program.push(OP_TRANSCRIBE);
+                push_u16(&mut program, rng.r#gen::<u16>());
+                program.push(rng.gen_range(1u8..=16u8));
+                stack_depth += 1;
+            }
+            2 => {
+                program.push(OP_FINALIZE_GENE_HASH);
+                stack_depth += 1;
+            }
+            // Consumers
+            3 => {
+                if stack_depth > 0 {
+                    program.push(OP_GENE_STORE);
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                    stack_depth -= 1;
+                }
+            }
+            4 => {
+                program.push(OP_MUTATE_POINT);
+                push_u16(&mut program, rng.r#gen::<u16>());
+                program.push(rng.r#gen::<u8>());
+            }
+            5 => {
+                if stack_depth > 0 && estimated_gene_len < MAX_GENE_SIZE {
+                    program.push(OP_INSERT);
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                    stack_depth -= 1;
+                    estimated_gene_len += 1;
+                }
+            }
+            6 => {
+                program.push(OP_DELETE);
+                push_u16(&mut program, rng.r#gen::<u16>());
+                stack_depth += 1;
+                if estimated_gene_len > 1 {
+                    estimated_gene_len -= 1;
+                }
+            }
+            7 => {
+                if stack_depth > 0 {
+                    program.push(OP_APPLY_MUTAGEN);
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                    stack_depth -= 1;
+                }
+            }
+            8 => {
+                if stack_depth > 0 {
+                    program.push(OP_CONSUME);
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                }
+            }
+            _ => {
+                if stack_depth > 0 {
+                    program.push(OP_PRODUCE);
+                    push_u16(&mut program, rng.r#gen::<u16>());
+                }
+            }
+        }
+    }
+
+    MutationOrder { step, program }
+}
+
+pub fn apply_program_clone(state: &GeneState, program: &[u8]) -> Result<GeneState, MutationError> {
+    let mut next = state.clone();
+    apply_program(&mut next, program)?;
+    Ok(next)
+}
+
+pub fn apply_program(state: &mut GeneState, program: &[u8]) -> Result<(), MutationError> {
+    let _ = execute_program(state, program)?;
+    Ok(())
+}
+
+pub fn execute_program(
+    state: &mut GeneState,
+    program: &[u8],
+) -> Result<ExecutionTrace, MutationError> {
+    if state.gene.is_empty() {
+        return Err(MutationError::EmptyGene);
+    }
+    validate_state(state)?;
+    if program.len() > MAX_MUTATION_PROGRAM_BYTES {
+        return Err(MutationError::ProgramTooLong { len: program.len() });
+    }
+
+    let mut ip = 0usize;
+    let mut stack: Vec<u32> = Vec::with_capacity(16);
+    while ip < program.len() {
+        let opcode_ip = ip;
+        let opcode = take_u8(program, &mut ip, 0x00)?;
+        match opcode {
+            OP_GENE_LOAD => {
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let normalized = normalize_index(idx as usize, state.gene.len());
+                stack.push(state.gene[normalized] as u32);
+            }
+            OP_GENE_STORE => {
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let value = pop_stack(&mut stack, opcode, opcode_ip)? as u8;
+                let normalized = normalize_index(idx as usize, state.gene.len());
+                state.gene[normalized] = value;
+            }
+            OP_MUTATE_POINT => {
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let delta = take_u8(program, &mut ip, opcode)? as i8;
+                let normalized = normalize_index(idx as usize, state.gene.len());
+                state.gene[normalized] = state.gene[normalized].wrapping_add(delta as u8);
+            }
+            OP_INSERT => {
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let value = pop_stack(&mut stack, opcode, opcode_ip)? as u8;
+                if state.gene.len() >= MAX_GENE_SIZE {
+                    return Err(MutationError::GeneFull {
+                        current_len: state.gene.len(),
+                    });
+                }
+                let insert_at = (idx as usize).min(state.gene.len());
+                state.gene.insert(insert_at, value);
+            }
+            OP_DELETE => {
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let normalized = normalize_index(idx as usize, state.gene.len());
+                let removed = if state.gene.len() > 1 {
+                    state.gene.remove(normalized)
+                } else {
+                    let prev = state.gene[0];
+                    state.gene[0] = 0;
+                    prev
+                };
+                stack.push(removed as u32);
+            }
+            OP_TRANSCRIBE => {
+                let start = take_u16(program, &mut ip, opcode)?;
+                let span = take_u8(program, &mut ip, opcode)?;
+                let transcription = transcribe_window(&state.gene, start as usize, span);
+                stack.push(transcription);
+            }
+            OP_APPLY_MUTAGEN => {
+                let symbol = take_u16(program, &mut ip, opcode)?;
+                let idx = take_u16(program, &mut ip, opcode)?;
+                let stack_mask = pop_stack(&mut stack, opcode, opcode_ip)? as u8;
+                let quantity = get_env_quantity(state, symbol);
+                let mix = ((quantity as u8)
+                    ^ ((quantity >> 8) as u8)
+                    ^ ((quantity >> 16) as u8)
+                    ^ ((quantity >> 24) as u8))
+                    ^ ((symbol & 0x00ff) as u8)
+                    ^ ((symbol >> 8) as u8)
+                    ^ stack_mask;
+                let normalized = normalize_index(idx as usize, state.gene.len());
+                state.gene[normalized] ^= mix;
+            }
+            OP_FINALIZE_GENE_HASH => {
+                let commit = crate::gene::commitment(state);
+                let hash32 = u32::from_le_bytes([commit[0], commit[1], commit[2], commit[3]]);
+                stack.push(hash32);
+            }
+            OP_CONSUME => {
+                let symbol = take_u16(program, &mut ip, opcode)?;
+                let amount = pop_stack(&mut stack, opcode, opcode_ip)?;
+                let left = sub_env_quantity(state, symbol, amount)?;
+                stack.push(left);
+            }
+            OP_PRODUCE => {
+                let symbol = take_u16(program, &mut ip, opcode)?;
+                let amount = pop_stack(&mut stack, opcode, opcode_ip)?;
+                let next = add_env_quantity(state, symbol, amount)?;
+                stack.push(next);
+            }
+            _ => return Err(MutationError::UnknownOpcode(opcode)),
+        }
+    }
+
+    Ok(ExecutionTrace {
+        final_ip: ip,
+        final_stack: stack,
+        final_gene_commitment_hex: crate::gene::commitment_hex(state),
+    })
+}
+
+fn transcribe_window(gene: &[u8], start: usize, span: u8) -> u32 {
+    let count = usize::from(span.max(1));
+    let mut acc = 2_166_136_261u32; // FNV offset basis
+    for i in 0..count {
+        let idx = (start + i) % gene.len();
+        acc ^= gene[idx] as u32;
+        acc = acc.wrapping_mul(16_777_619); // FNV prime
+    }
+    acc
+}
+
+fn push_u16(buf: &mut Vec<u8>, value: u16) {
+    buf.extend_from_slice(&value.to_le_bytes());
+}
+
+fn take_u8(bytes: &[u8], ip: &mut usize, opcode: u8) -> Result<u8, MutationError> {
+    if *ip >= bytes.len() {
+        return Err(MutationError::TruncatedInstruction { opcode, ip: *ip });
+    }
+    let value = bytes[*ip];
+    *ip += 1;
+    Ok(value)
+}
+
+fn take_u16(bytes: &[u8], ip: &mut usize, opcode: u8) -> Result<u16, MutationError> {
+    if *ip + 2 > bytes.len() {
+        return Err(MutationError::TruncatedInstruction { opcode, ip: *ip });
+    }
+    let value = u16::from_le_bytes([bytes[*ip], bytes[*ip + 1]]);
+    *ip += 2;
+    Ok(value)
+}
+
+fn pop_stack(stack: &mut Vec<u32>, opcode: u8, ip: usize) -> Result<u32, MutationError> {
+    stack
+        .pop()
+        .ok_or(MutationError::StackUnderflow { opcode, ip })
+}
+
+fn normalize_index(idx: usize, len: usize) -> usize {
+    idx % len
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::gene::{commitment, new_state, set_env_quantity};
+    use rand::{Rng, SeedableRng};
+    use std::time::Instant;
+
+    fn u16_bytes(v: u16) -> [u8; 2] {
+        v.to_le_bytes()
+    }
+
+    #[test]
+    fn test_opcode_gene_load() {
+        let mut state = new_state(4).unwrap();
+        state.gene = vec![10, 20, 30, 40];
+        let trace = execute_program(&mut state, &[OP_GENE_LOAD, 1, 0]).unwrap();
+        assert_eq!(trace.final_stack, vec![20]);
+    }
+
+    #[test]
+    fn test_opcode_gene_store() {
+        let mut state = new_state(4).unwrap();
+        state.gene = vec![1, 2, 3, 4];
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // stack: [1]
+            OP_GENE_STORE,
+            2,
+            0, // gene[2] <- 1
+        ];
+        execute_program(&mut state, &program).unwrap();
+        assert_eq!(state.gene, vec![1, 2, 1, 4]);
+    }
+
+    #[test]
+    fn test_opcode_mutate_point() {
+        let mut state = new_state(4).unwrap();
+        state.gene[0] = 200;
+        let program = vec![OP_MUTATE_POINT, 0, 0, 100u8];
+        execute_program(&mut state, &program).unwrap();
+        assert_eq!(state.gene[0], 44);
+    }
+
+    #[test]
+    fn test_opcode_insert() {
+        let mut state = new_state(3).unwrap();
+        state.gene = vec![10, 20, 30];
+        let program = vec![
+            OP_GENE_LOAD,
+            1,
+            0, // stack: [20]
+            OP_INSERT,
+            0,
+            0, // insert 20 at position 0
+        ];
+        execute_program(&mut state, &program).unwrap();
+        assert_eq!(state.gene, vec![20, 10, 20, 30]);
+    }
+
+    #[test]
+    fn test_opcode_delete() {
+        let mut state = new_state(4).unwrap();
+        state.gene = vec![9, 8, 7, 6];
+        let trace = execute_program(&mut state, &[OP_DELETE, 2, 0]).unwrap();
+        assert_eq!(state.gene, vec![9, 8, 6]);
+        assert_eq!(trace.final_stack, vec![7]);
+    }
+
+    #[test]
+    fn test_opcode_transcribe() {
+        let mut state = new_state(5).unwrap();
+        state.gene = vec![1, 2, 3, 4, 5];
+        let trace = execute_program(&mut state, &[OP_TRANSCRIBE, 1, 0, 3]).unwrap();
+        assert_eq!(trace.final_stack.len(), 1);
+        assert_ne!(trace.final_stack[0], 0);
+    }
+
+    #[test]
+    fn test_opcode_apply_mutagen() {
+        let mut state = new_state(4).unwrap();
+        set_env_quantity(&mut state, 7, 0x1234_5678).unwrap();
+        state.gene[1] = 0xAA;
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // stack mask source
+            OP_APPLY_MUTAGEN,
+            7,
+            0,
+            1,
+            0,
+        ];
+        execute_program(&mut state, &program).unwrap();
+        assert_ne!(state.gene[1], 0xAA);
+    }
+
+    #[test]
+    fn test_opcode_finalize_gene_hash() {
+        let mut state = new_state(4).unwrap();
+        let trace = execute_program(&mut state, &[OP_FINALIZE_GENE_HASH]).unwrap();
+        assert_eq!(trace.final_stack.len(), 1);
+    }
+
+    #[test]
+    fn test_opcode_consume() {
+        let mut state = new_state(4).unwrap();
+        set_env_quantity(&mut state, 3, 100).unwrap();
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // stack = [0]
+            OP_MUTATE_POINT,
+            0,
+            0,
+            15, // gene[0]=15
+            OP_GENE_LOAD,
+            0,
+            0, // stack=[0,15]
+            OP_CONSUME,
+            3,
+            0, // consume 15
+        ];
+        let trace = execute_program(&mut state, &program).unwrap();
+        assert_eq!(get_env_quantity(&state, 3), 85);
+        assert_eq!(trace.final_stack.last().copied().unwrap(), 85);
+    }
+
+    #[test]
+    fn test_opcode_produce() {
+        let mut state = new_state(4).unwrap();
+        set_env_quantity(&mut state, 9, 5).unwrap();
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // stack [0]
+            OP_MUTATE_POINT,
+            0,
+            0,
+            10, // gene[0]=10
+            OP_GENE_LOAD,
+            0,
+            0, // stack [0,10]
+            OP_PRODUCE,
+            9,
+            0, // +10
+        ];
+        let trace = execute_program(&mut state, &program).unwrap();
+        assert_eq!(get_env_quantity(&state, 9), 15);
+        assert_eq!(trace.final_stack.last().copied().unwrap(), 15);
+    }
+
+    #[test]
+    fn test_zero_length_gene_is_rejected() {
+        let mut state = GeneState {
+            gene: vec![],
+            environment: vec![],
+        };
+        let err = execute_program(&mut state, &[OP_FINALIZE_GENE_HASH]).unwrap_err();
+        assert_eq!(err, MutationError::EmptyGene);
+    }
+
+    #[test]
+    fn test_insert_rejects_max_size_gene() {
+        let mut state = new_state(MAX_GENE_SIZE).unwrap();
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // push value
+            OP_INSERT,
+            0,
+            0,
+        ];
+        let err = execute_program(&mut state, &program).unwrap_err();
+        assert!(matches!(err, MutationError::GeneFull { .. }));
+    }
+
+    #[test]
+    fn test_invalid_positions_wrap_deterministically() {
+        let mut state_a = new_state(5).unwrap();
+        let mut state_b = new_state(5).unwrap();
+        let max_u16 = u16::MAX;
+        let [a0, a1] = u16_bytes(max_u16);
+        let program = vec![OP_MUTATE_POINT, a0, a1, 1];
+        execute_program(&mut state_a, &program).unwrap();
+
+        let wrapped = (max_u16 as usize % 5) as u16;
+        let [w0, w1] = u16_bytes(wrapped);
+        let wrapped_program = vec![OP_MUTATE_POINT, w0, w1, 1];
+        execute_program(&mut state_b, &wrapped_program).unwrap();
+        assert_eq!(state_a, state_b);
+    }
+
+    #[test]
+    fn test_quantity_underflow_is_saturating() {
+        let mut state = new_state(4).unwrap();
+        set_env_quantity(&mut state, 1, 3).unwrap();
+        state.gene[0] = 8;
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0, // 8
+            OP_CONSUME,
+            1,
+            0, // consume 8 from qty 3 => 0
+        ];
+        let trace = execute_program(&mut state, &program).unwrap();
+        assert_eq!(get_env_quantity(&state, 1), 0);
+        assert_eq!(trace.final_stack.last().copied().unwrap(), 0);
+    }
+
+    #[test]
+    fn test_rejects_unknown_opcode() {
+        let mut state = new_state(8).unwrap();
+        let err = execute_program(&mut state, &[0xFF]).unwrap_err();
+        assert_eq!(err, MutationError::UnknownOpcode(0xFF));
+    }
+
+    #[test]
+    fn test_rejects_truncated_instruction() {
+        let mut state = new_state(8).unwrap();
+        let err = execute_program(&mut state, &[OP_GENE_LOAD, 1]).unwrap_err();
+        assert!(matches!(err, MutationError::TruncatedInstruction { .. }));
+    }
+
+    #[test]
+    fn test_rejects_stack_underflow() {
+        let mut state = new_state(8).unwrap();
+        let err = execute_program(&mut state, &[OP_GENE_STORE, 0, 0]).unwrap_err();
+        assert!(matches!(err, MutationError::StackUnderflow { .. }));
+    }
+
+    #[test]
+    fn test_base64_order_roundtrip() {
+        let order = MutationOrder {
+            step: 17,
+            program: vec![OP_GENE_LOAD, 1, 0, OP_GENE_STORE, 2, 0],
+        };
+        let b64 = encode_order_b64(&order);
+        let decoded = decode_order_b64(order.step, &b64).unwrap();
+        assert_eq!(decoded, order);
+    }
+
+    #[test]
+    fn test_generate_order_is_deterministic_for_seeded_rng() {
+        let mut rng_a = rand::rngs::StdRng::seed_from_u64(99);
+        let mut rng_b = rand::rngs::StdRng::seed_from_u64(99);
+        let order_a = generate_order_with_rng(&mut rng_a, 5, 64);
+        let order_b = generate_order_with_rng(&mut rng_b, 5, 64);
+        assert_eq!(order_a, order_b);
+    }
+
+    #[test]
+    fn test_mutation_chain() {
+        let mut server_state = new_state(32).unwrap();
+        let mut client_state = new_state(32).unwrap();
+
+        let program = vec![
+            OP_GENE_LOAD,
+            0,
+            0,
+            OP_PRODUCE,
+            2,
+            0, // env[2]+=gene[0]
+            OP_GENE_LOAD,
+            1,
+            0,
+            OP_APPLY_MUTAGEN,
+            2,
+            0,
+            1,
+            0, // mutagen at idx1
+            OP_TRANSCRIBE,
+            0,
+            0,
+            8, // hash window
+            OP_GENE_STORE,
+            2,
+            0, // gene[2]=transcription_low_byte
+            OP_DELETE,
+            0,
+            0, // stack pushes removed
+            OP_INSERT,
+            3,
+            0, // insert removed at position 3
+            OP_FINALIZE_GENE_HASH,
+        ];
+
+        let server_trace = execute_program(&mut server_state, &program).unwrap();
+        let client_trace = execute_program(&mut client_state, &program).unwrap();
+
+        assert_eq!(server_state, client_state);
+        assert_eq!(server_trace.final_stack, client_trace.final_stack);
+        assert_eq!(
+            server_trace.final_gene_commitment_hex,
+            client_trace.final_gene_commitment_hex
+        );
+    }
+
+    #[test]
+    fn test_server_client_parity_across_random_orders() {
+        let mut rng = rand::rngs::StdRng::seed_from_u64(7);
+        for step in 0..128u64 {
+            let order = generate_order_with_rng(&mut rng, step, 128);
+            let mut server_state = new_state(128).unwrap();
+            let mut client_state = new_state(128).unwrap();
+
+            let server_result = execute_program(&mut server_state, &order.program);
+            let client_result = execute_program(&mut client_state, &order.program);
+            assert_eq!(server_result.is_ok(), client_result.is_ok());
+
+            match (server_result, client_result) {
+                (Ok(server_trace), Ok(client_trace)) => {
+                    assert_eq!(server_state, client_state);
+                    assert_eq!(server_trace.final_stack, client_trace.final_stack);
+                    assert_eq!(
+                        commitment(&server_state),
+                        commitment(&client_state),
+                        "step {step}"
+                    );
+                }
+                (Err(a), Err(b)) => assert_eq!(a.to_string(), b.to_string()),
+                _ => unreachable!(),
+            }
+        }
+    }
+
+    #[test]
+    fn test_fuzz_style_random_program_bytes_do_not_diverge() {
+        let mut rng = rand::rngs::StdRng::seed_from_u64(2026);
+        for _ in 0..256 {
+            let len = rng.gen_range(1usize..=MAX_MUTATION_PROGRAM_BYTES);
+            let mut program = vec![0u8; len];
+            for b in &mut program {
+                *b = rng.r#gen::<u8>();
+            }
+
+            let mut a = new_state(64).unwrap();
+            let mut b = new_state(64).unwrap();
+            let ra = execute_program(&mut a, &program);
+            let rb = execute_program(&mut b, &program);
+            assert_eq!(ra.is_ok(), rb.is_ok());
+            if ra.is_ok() {
+                assert_eq!(a, b);
+            }
+        }
+    }
+
+    #[test]
+    fn test_performance_smoke_mutation_execution() {
+        let mut rng = rand::rngs::StdRng::seed_from_u64(11);
+        let mut programs = Vec::new();
+        for step in 0..200u64 {
+            programs.push(generate_order_with_rng(&mut rng, step + 1, 512).program);
+        }
+
+        let start = Instant::now();
+        let mut state = new_state(512).unwrap();
+        for program in &programs {
+            let _ = execute_program(&mut state, program);
+        }
+        let elapsed = start.elapsed();
+        // Wide bound for CI variability; this is a regression guard, not a strict benchmark.
+        assert!(
+            elapsed.as_secs_f64() < 2.0,
+            "mutation execution too slow: {elapsed:?}"
+        );
+    }
+}

wasm/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "chronoseal-wasm"
-version = "0.5.0"
+version = "0.6.0"
 edition = "2021"
 
 [lib]

wasm/src/lib.rs

@@ -4,3 +4,4 @@ pub mod entropy;
 pub mod fingerprint;
 pub mod transport;
 pub mod vm;
+pub mod vm_extensions;

wasm/src/vm_extensions.rs

@@ -0,0 +1,190 @@
+use std::cell::RefCell;
+use wasm_bindgen::prelude::*;
+
+thread_local! {
+    static GENE_STATE: RefCell<Option<shared::gene::GeneState>> = const { RefCell::new(None) };
+    static PREVIEW_STATE: RefCell<Option<shared::gene::GeneState>> = const { RefCell::new(None) };
+}
+
+#[wasm_bindgen]
+pub fn init_gene_state(gene_size: u32) -> bool {
+    let Ok(state) = shared::gene::new_state(gene_size as usize) else {
+        return false;
+    };
+    GENE_STATE.with(|slot| *slot.borrow_mut() = Some(state));
+    PREVIEW_STATE.with(|slot| *slot.borrow_mut() = None);
+    true
+}
+
+#[wasm_bindgen]
+pub fn preview_gene_commitment(order_b64: &str) -> String {
+    let order = match shared::vm_extensions::decode_order_b64(0, order_b64) {
+        Ok(order) => order,
+        Err(_) => return String::new(),
+    };
+
+    let candidate = GENE_STATE.with(|slot| {
+        let state = slot.borrow();
+        let Some(current) = state.as_ref() else {
+            return None;
+        };
+        shared::vm_extensions::apply_program_clone(current, &order.program).ok()
+    });
+
+    let Some(candidate) = candidate else {
+        return String::new();
+    };
+    let commitment = shared::gene::commitment_hex(&candidate);
+    PREVIEW_STATE.with(|slot| *slot.borrow_mut() = Some(candidate));
+    commitment
+}
+
+#[wasm_bindgen]
+pub fn commit_gene_preview() -> bool {
+    let next = PREVIEW_STATE.with(|slot| slot.borrow_mut().take());
+    let Some(next) = next else {
+        return false;
+    };
+    GENE_STATE.with(|slot| *slot.borrow_mut() = Some(next));
+    true
+}
+
+#[wasm_bindgen]
+pub fn discard_gene_preview() {
+    PREVIEW_STATE.with(|slot| *slot.borrow_mut() = None);
+}
+
+#[wasm_bindgen]
+pub fn current_gene_commitment() -> String {
+    GENE_STATE.with(|slot| {
+        slot.borrow()
+            .as_ref()
+            .map(shared::gene::commitment_hex)
+            .unwrap_or_default()
+    })
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use rand::SeedableRng;
+
+    fn order_b64(program: Vec<u8>) -> String {
+        let order = shared::vm_extensions::MutationOrder { step: 1, program };
+        shared::vm_extensions::encode_order_b64(&order)
+    }
+
+    #[test]
+    fn test_init_gene_state_success() {
+        assert!(init_gene_state(64));
+        let commitment = current_gene_commitment();
+        assert_eq!(commitment.len(), 64);
+    }
+
+    #[test]
+    fn test_init_gene_state_rejects_zero() {
+        assert!(!init_gene_state(0));
+    }
+
+    #[test]
+    fn test_preview_requires_initialized_state() {
+        discard_gene_preview();
+        GENE_STATE.with(|slot| *slot.borrow_mut() = None);
+        let c = preview_gene_commitment(&order_b64(vec![
+            shared::vm_extensions::OP_MUTATE_POINT,
+            0,
+            0,
+            1,
+        ]));
+        assert!(c.is_empty());
+    }
+
+    #[test]
+    fn test_preview_rejects_invalid_order() {
+        init_gene_state(16);
+        let c = preview_gene_commitment("***bad-base64***");
+        assert!(c.is_empty());
+    }
+
+    #[test]
+    fn test_commit_applies_preview() {
+        init_gene_state(16);
+        let before = current_gene_commitment();
+        let order = order_b64(vec![shared::vm_extensions::OP_MUTATE_POINT, 0, 0, 1]);
+        let preview = preview_gene_commitment(&order);
+        assert_ne!(preview, before);
+        assert!(commit_gene_preview());
+        let after = current_gene_commitment();
+        assert_eq!(preview, after);
+    }
+
+    #[test]
+    fn test_discard_preview_keeps_committed_state() {
+        init_gene_state(16);
+        let before = current_gene_commitment();
+        let order = order_b64(vec![shared::vm_extensions::OP_MUTATE_POINT, 0, 0, 0xFF]);
+        let preview = preview_gene_commitment(&order);
+        assert_ne!(preview, before);
+        discard_gene_preview();
+        let after = current_gene_commitment();
+        assert_eq!(before, after);
+    }
+
+    #[test]
+    fn test_commit_without_preview_returns_false() {
+        init_gene_state(16);
+        discard_gene_preview();
+        assert!(!commit_gene_preview());
+    }
+
+    #[test]
+    fn test_preview_commitment_matches_shared_engine() {
+        init_gene_state(16);
+        let order = shared::vm_extensions::MutationOrder {
+            step: 3,
+            program: vec![
+                shared::vm_extensions::OP_GENE_LOAD,
+                0,
+                0,
+                shared::vm_extensions::OP_PRODUCE,
+                1,
+                0,
+                shared::vm_extensions::OP_GENE_LOAD,
+                2,
+                0,
+                shared::vm_extensions::OP_APPLY_MUTAGEN,
+                1,
+                0,
+                2,
+                0,
+            ],
+        };
+        let b64 = shared::vm_extensions::encode_order_b64(&order);
+
+        let preview = preview_gene_commitment(&b64);
+
+        let mut expected = shared::gene::new_state(16).unwrap();
+        shared::vm_extensions::apply_program(&mut expected, &order.program).unwrap();
+        assert_eq!(preview, shared::gene::commitment_hex(&expected));
+    }
+
+    #[test]
+    fn test_table_driven_parity_across_many_generated_orders() {
+        init_gene_state(64);
+        let mut rng = rand::rngs::StdRng::seed_from_u64(123);
+        let mut expected = shared::gene::new_state(64).unwrap();
+
+        for step in 0..24u64 {
+            let order = shared::vm_extensions::generate_order_with_rng(&mut rng, step + 1, 64);
+            let b64 = shared::vm_extensions::encode_order_b64(&order);
+
+            let preview = preview_gene_commitment(&b64);
+            shared::vm_extensions::apply_program(&mut expected, &order.program).unwrap();
+            let expected_commitment = shared::gene::commitment_hex(&expected);
+
+            assert_eq!(preview, expected_commitment);
+            assert!(commit_gene_preview());
+            assert_eq!(current_gene_commitment(), expected_commitment);
+        }
+    }
+}